Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08362 ATGTCACCACCACAAAGTGGCATCATCCACTCTTCGGAATCTGACGCCGTGGACGGTAACTTGAAGGAAATCACTGAGCTCACCCTTGGCCTTCCCGGTACCAAAACTTCTGCAGCTGCAGGCACAAAACGTGGCTTCACTGACACCGTTGATCTCCATCTTGGCACCACTTCTGAAAATTCAGCAAATAACTGCTTGCGCTCCACCGCCAAATTCCCACCACCCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCGATGAAGAGTTGCAAGTACGTGAAGGTGGCGGTGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTATGAAAGTTATGAGCATCTGCTGAGGGCATTAGAGGCCATGTTTTGTTGCTTAACAATTCGTAATGATTCGATGAATGAGATGAAACTGATGGATACTGGGAATGGGATTGAATACATGCCCACCTACGAGGACAGAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAAGCGTGCAAGAGGATAAGGCTCATGATTAGCTCAGAGGCTATTGATCACTTAGGTTAG 594 0.4865 MSPPQSGIIHSSESDAVDGNLKEITELTLGLPGTKTSAAAGTKRGFTDTVDLHLGTTSENSANNCLRSTAKFPPPKAQVVGWPPVRASRKNAMKSCKYVKVAVDGAPYLRKVDLEMYESYEHLLRALEAMFCCLTIRNDSMNEMKLMDTGNGIEYMPTYEDRDGDWMLVGDVPWKMFVEACKRIRLMISSEAIDHLG. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08362 197 ProSiteProfiles PB1 domain profile. 96 191 IPR000270 GO:0005515
Seca3g08362 197 FunFam Auxin-responsive protein 91 196 - -
Seca3g08362 197 Pfam AUX/IAA family 94 193 IPR033389 -
Seca3g08362 197 SUPERFAMILY CAD & PB1 domains 88 188 - -
Seca3g08362 197 Gene3D - 90 196 - -
Seca3g08362 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 193 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08362 Seca-Chr3 213372569 213374452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08362 89 192 B3 DNA Binding Superfamily AT2G46530 29.808 7.12e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca3g08362 AUX_IAA 1.9e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08362 K14484 - gmx:100815098 263.462