Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08358 ATGAAGAAAGAAAAGAGTGTCACTGTGAAAGCTGGTGAGGTCCCTGGTCGATTGACTCGTGCTCGAGCTGCTGCTTTTCGTGCTTCTGGACAGTTGCCCCCTTTGAAGGGGGCACCACAAGGAAGTCAGAAGCAGTCCCTAGGAGCCAATTCAAAAAGAGCAGTTTCAGACAATACATGTCTTCCGCGAAAGAAGAGGGCTGTTTTTCAGGATGTCACTAACGTTTGCTGTGAAAATACATACACTAGCTGTTTCAATGCAGCTAAAATTCAGGGTAAGAAAAGCAAGCTGGCTAAGCCTGCTCAACTCAGTGTTTCCAAAGTGGTTCCATCAGTTGCTGTGGAGCTACCACAACTTCAAGTTGACTCAAAAGCAGAGAGTTTGCCACAAACGGGGCTTAGATCAGAAGATGTCATGTGCTCAGTTAATTTGGAAGACAATGCAATTCTTCATCTGAGTGCCAACCGGTGTGGCACATATGATAATCTGCTTGACAGCCAGACATCTGGAATATCTGCTCAGCCTTTGATTTCTCAAAAGAAAGGTTTTTCTTCTATTTTTATTACCTGCATGACTGCTTCACAAACTGTTGCAGCCAAGAAAGGTAGCCTTTCTGAATCTCTGAATGCATCAAAGGATCCAGATGTTGCTGACATAGATGCTGATTTTGAGGACCCTCAACTGTGCAGCATGTATGCCACTGATATCTATGACAACTTGCATGTTGCTGAGCTGTCGAGAAGGCCTTGTCCTAACTTCATGGAAACAGTACAGCGAGATATCACTCAAAGCATGCGTGGGATACTGGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAGATTGGGAGCAGACACTCTTTACCTCACTGTATATCTCATAGATTGGTTTCTCTCAAAAAATTACATTGAAAGACAAAGACTTCAGCTGCTTGGCATCACCTGCATGCTAATTGCCTCGAAGTACGAAGAAATTAATGCCCCTCGTATTGAAGAATTCTGCTTCATCACAGACAACACATACAAAAAAGAAGAGGTACTTAAACTGGAAACTGAAGTGTTAAAGTCCTCTGCATATAAACTGTTTGCTCCCACTACAAAAATTTTCCTCAGGCGGTTTCTTCGAGCAGCACAGGCTTCTTACAAGAGTCCCAGCTTTGAATTGGAGTACTTGGCCAATTACCTGGCTGAACTAACACTGATGAACTATGGTTTCTTAAACTTCCCTCCTTCTAAGATTGCTGCATCTGCTGTATTTCTCGCCAGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTCAACATTACGCTTCTTACAAGGCATCAGATTTGAAAACCACAGTTGTTGCATTACAGGATCTACAGCTCAATAGCGATGGCTGCCCTTTAACTGCAATCCGCACAAAGTACAGACAAGACAAGTTCAAATGTGTAGCAGCTTTGTCTTCACCAAAACTGCTTGAAACTCTGTTCTGA 1485 0.4323 MKKEKSVTVKAGEVPGRLTRARAAAFRASGQLPPLKGAPQGSQKQSLGANSKRAVSDNTCLPRKKRAVFQDVTNVCCENTYTSCFNAAKIQGKKSKLAKPAQLSVSKVVPSVAVELPQLQVDSKAESLPQTGLRSEDVMCSVNLEDNAILHLSANRCGTYDNLLDSQTSGISAQPLISQKKGFSSIFITCMTASQTVAAKKGSLSESLNASKDPDVADIDADFEDPQLCSMYATDIYDNLHVAELSRRPCPNFMETVQRDITQSMRGILVDWLVEVSEEYRLGADTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYKKEEVLKLETEVLKSSAYKLFAPTTKIFLRRFLRAAQASYKSPSFELEYLANYLAELTLMNYGFLNFPPSKIAASAVFLARWTLDQSSHPWNPTLQHYASYKASDLKTTVVALQDLQLNSDGCPLTAIRTKYRQDKFKCVAALSSPKLLETLF. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08358 494 CDD CYCLIN_AtCycA-like_rpt2 364 478 - -
Seca3g08358 494 MobiDBLite consensus disorder prediction 36 54 - -
Seca3g08358 494 SUPERFAMILY Cyclin-like 364 489 IPR036915 -
Seca3g08358 494 Gene3D - 249 362 - -
Seca3g08358 494 CDD CYCLIN_AtCycA_like_rpt1 225 356 - -
Seca3g08358 494 Pfam Cyclin, C-terminal domain 364 486 IPR004367 -
Seca3g08358 494 PANTHER CYCLINS 200 474 IPR039361 -
Seca3g08358 494 FunFam Cyclin A1 351 483 - -
Seca3g08358 494 FunFam Mitotic cyclin 6 249 349 - -
Seca3g08358 494 SMART Cyclin_C_2 364 487 IPR004367 -
Seca3g08358 494 Gene3D - 235 483 - -
Seca3g08358 494 Pfam Cyclin, N-terminal domain 235 356 IPR006671 -
Seca3g08358 494 MobiDBLite consensus disorder prediction 25 54 - -
Seca3g08358 494 SUPERFAMILY Cyclin-like 224 356 IPR036915 -
Seca3g08358 494 SMART cyclin_7 368 456 IPR013763 -
Seca3g08358 494 SMART cyclin_7 271 355 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08358 Seca-Chr3 213307993 213314704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08358 1 494 Core Cell Cycle Gene Families AT1G80370 52.008 3.12e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08358 K06627 - gmx:100789757 667.922