Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08320 ATGTCTGATTCGAGTCATAACTTGTTGGCAGGCATCGATAGTTTATGTGCTTTTGATCACAATCACAGGCCACACAGGGCAACCCAACCTGCTTGTCAAGCAATAAAGAACCTTCATACAGAACATGGAGAGCTTCAACTCCACCATTTCCACCTCTTACGCCTCCTAGGCTGTGGGGATATTGGAAAAGTTTTCCTCTGTGAGCTTAACCAATCTTTGAAGCCACAACCCAATTGCTATTACGCCATGAAAGTAGTAGATACAAAGTCCCTGAAGTTAAGAAATAGTTTGAGAAGGGCAGATATGGAGAAGGAAGTACTGAGCATGCTTGATCACCCTTTTTTGCCAACCCTTTATGCAAAGTTTGATGCTTTTCAACACTCATGTTTGGTCATGGATTATTGTCCTGGTGGGGACTTGTTTACACTTCAGCAGCAACAGCCAGAACTTCACTTTAGCATCTCCACTGTAAGATTCTATGCAGCTGAGGTGCTTCTTGCTATTGAGTATCTCCATATGATGGGGATAGTTTATAGAGACCTCAAGCCAGAAAATGTGCTTATTCAAGAAAATGGGCATATCATGCTATCTGACTTTGATCTCTCTCTTCACTTGGAAGTTCAACCCAAGCTTCTAAAACAAGGGCTTGAGTATGAGCTTTTGAACAAGAGAATTAGGAAGCCAATGTTCTGTTGCAGCAGGAATTCAGATGAGGATATGAAAAGGAGAAAGAAAAAGACAGCACATGGAGTGGAAATTGAAATGTCAGCTGAACCCATGAGTGGTAGATCACACTCATTTATTGGGACTCATGAGTATTTAGCACCAGAGATGATTTTGGGATTAGGCCATGGAAGTGCAGTGGATTGGTGGGCATTTGGGGTGTTTCTATATGAGCTGTTATTTGGATTTACACCTTTTAAAGATGAAAGCAATGAGAAAACATTGAAGAATATCATGGGGCAGAAATTAACCTTCCCAGGAAGAAGTACTAATTCTAGTGACAAAAAAGATTGTGAGGAGATTGCAAAGGTTCAGGACCTTATGAGGAAGCTGCTGGTGAAAAATCCCCACAAGAGAATGGGATACCACACAGGATCTTGTGAGATTAAAAAACATGAGTTCTTTGAGGGGGTAAATTGGGCCTTAATCAGATCAGTTAAACCTCCTTTTGTTCCTAGAACTTCACAGTTACATGAAAAACAGACCTCAATTACCATGCCAAAACTAAGCGTCAAGGATACAGCTACAATATTGCAAGGCCCTCATCAAATTGATTTCTTCTAA 1287 0.4087 MSDSSHNLLAGIDSLCAFDHNHRPHRATQPACQAIKNLHTEHGELQLHHFHLLRLLGCGDIGKVFLCELNQSLKPQPNCYYAMKVVDTKSLKLRNSLRRADMEKEVLSMLDHPFLPTLYAKFDAFQHSCLVMDYCPGGDLFTLQQQQPELHFSISTVRFYAAEVLLAIEYLHMMGIVYRDLKPENVLIQENGHIMLSDFDLSLHLEVQPKLLKQGLEYELLNKRIRKPMFCCSRNSDEDMKRRKKKTAHGVEIEMSAEPMSGRSHSFIGTHEYLAPEMILGLGHGSAVDWWAFGVFLYELLFGFTPFKDESNEKTLKNIMGQKLTFPGRSTNSSDKKDCEEIAKVQDLMRKLLVKNPHKRMGYHTGSCEIKKHEFFEGVNWALIRSVKPPFVPRTSQLHEKQTSITMPKLSVKDTATILQGPHQIDFF. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08320 428 SMART serkin_6 50 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08320 428 Gene3D Phosphorylase Kinase; domain 1 48 134 - -
Seca3g08320 428 Gene3D Transferase(Phosphotransferase) domain 1 256 394 - -
Seca3g08320 428 Gene3D Transferase(Phosphotransferase) domain 1 135 204 - -
Seca3g08320 428 ProSiteProfiles AGC-kinase C-terminal domain profile. 377 428 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca3g08320 428 SUPERFAMILY Protein kinase-like (PK-like) 34 408 IPR011009 -
Seca3g08320 428 PANTHER FLIPPASE KINASE 1-RELATED 19 398 - -
Seca3g08320 428 Pfam Protein kinase domain 50 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08320 428 Pfam Protein kinase domain 264 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08320 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Seca3g08320 428 ProSiteProfiles Protein kinase domain profile. 50 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08320 Seca-Chr3 212323796 212325321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08320 23 402 AGC Kinase Gene Family AT2G26700 48.182 4.25e-135 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g08320 Pkinase 2.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08320 K08286 - nnu:104592366 471.855