Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08307 ATGAGCGAGGAGTTGGGGTTTGAGTTCAGCATCAACATGGAAACAGAAGCATGCCCTTTTCCCCAATCACATTTCAAGAAGCCCAAAATATCACCAACAGCAGAAACACCCTTCAATCATCCTAACTTGAAGGTGAAGACTCAGCTCTGCAGAAGGTTCAGGCTGGGAATGTGCACTCTTGGGTCCAAATGCAACTACGCTCATGGCATTGGTGAGCTTAGACGTTCCTCATTTCAAGAACACAGACCCAAACTATGCAGATTGTTCCTTCGAAATAAACACTGCACCTATGGCCACACCTGTCGCTTCGTTCATTCAACTGCTGCAGAAAGTGTTCATTCTCCAAACAACAACTGGGAAGACTACGAGATTAAAGGTTACACTTTTCGGGGAAATTCTCATGCACAGCTTCAACCACCAGAATACAGGACAATGCAAAGTTCTGCTCATGCTACAATTGATGGTAACTCTTCTGCAGAATACAGGACAATGCAATCTTCTACTGCTGCTACACATACAAATGCCTTAACCAGCACAGTTGCAACTAGCTCTGTGCATAAGAATGAACAATATGTTGTGAAGGGCATATTCAAGGAAAATGAACTGCAAAGGATCAGTCGCATCTATGCTGATTGGATTTAA 642 0.4346 MSEELGFEFSINMETEACPFPQSHFKKPKISPTAETPFNHPNLKVKTQLCRRFRLGMCTLGSKCNYAHGIGELRRSSFQEHRPKLCRLFLRNKHCTYGHTCRFVHSTAAESVHSPNNNWEDYEIKGYTFRGNSHAQLQPPEYRTMQSSAHATIDGNSSAEYRTMQSSTAATHTNALTSTVATSSVHKNEQYVVKGIFKENELQRISRIYADWI. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08307 213 SMART c3hfinal6 44 70 IPR000571 GO:0046872
Seca3g08307 213 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Seca3g08307 213 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Seca3g08307 213 Gene3D - 39 76 - -
Seca3g08307 213 Gene3D - 78 110 - -
Seca3g08307 213 SUPERFAMILY CCCH zinc finger 80 107 IPR036855 GO:0046872
Seca3g08307 213 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 106 IPR000571 GO:0046872
Seca3g08307 213 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 69 IPR000571 GO:0046872
Seca3g08307 213 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872
Seca3g08307 213 PANTHER CCCH ZINC FINGER/TIS11-RELATED 10 156 IPR045877 GO:0003729
Seca3g08307 213 SUPERFAMILY CCCH zinc finger 43 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08307 Seca-Chr3 212099040 212100648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08307 46 110 C3H Transcription Factor Family AT1G68200 38.806 4.05e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g08307 zf-CCCH 2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08307 - - cam:101493245 193.741