Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08266 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCATCCATTATTTAGGAAAAGGAGGGTGTGGCTTGGGACATTTGAAACTGCTGAAGAAGCAGCAAGAGCATATGATGAGGCAGCAATTTTAATGAGTGGAAGAAATGCCAAAACTAACTTCCCAGTTGCTGATAATCAAAAGGGAAATCACAATTCTACTTCAGCTTTTTCCAATACATTTTCTGCAGTTCTCAGTGCAAAGCTCAGGAAGTGTTGTAAGTCCCCTTCACCTTCCCTCACTTGTCTAAGGCTTGATGCAGAGAATTCCCACTTTGGGGTGTGGCAGAAGAGAGCAGGGCCTCATTCTGAATCAAACTGGATCATGATGGTTGAATTGGAAAGGAAAAATAGTGGAACTTCTTCTGATTCAGAATTGTCAGTGGTAGAGACACCAGAAAATGTAATAAAACCAAAGGAAAATAACAATGCCTTGGATGAGGAGCAGAGGATTGCCTTGCAGATGATAGAAGAACTCCTGAATAGGAATTAG 558 0.4229 MVQSKKFRGVRQRHWGSWVSEIRHPLFRKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVADNQKGNHNSTSAFSNTFSAVLSAKLRKCCKSPSPSLTCLRLDAENSHFGVWQKRAGPHSESNWIMMVELERKNSGTSSDSELSVVETPENVIKPKENNNALDEEQRIALQMIEELLNRN. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08266 185 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Seca3g08266 185 Coils Coil 164 184 - -
Seca3g08266 185 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Seca3g08266 185 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Seca3g08266 185 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Seca3g08266 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08266 Seca-Chr3 211028777 211029830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08266 1 185 AP2-EREBP Transcription Factor Family AT1G15360 61.500 4.99e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08266 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08266 - - gmx:100778381 276.944