Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08229 ATGGCTTTTTGCCCAATCTTTTGTTGCGGAAATGCTTCAGATCGCAAAGGAAGAGGGAAGAAACAACCTCCATGGAGGGTGTTCTCTTTGAAGGAATTACACTCAGCTACAAATAACTTCAACTATGATAACAAGCTCGGCGAAGGGGGATTTGGCAGTGTGTACTGGGGCCAGCTTTGGGATGGATCACAAACGCAGATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATCGTATATGACTACATGCCGAATTTGAGTCTACTCTCTCATCTTCATGGACAGCATTCAGCAGAATCCCTTCTTGATTGGAATCGACGAATGAATATTGCAATCGGATCTGCTGAGGGAATTGTATATCTTCACCACCAAGCAACACCACATATCATTCACAGGGATATTAAAGCAAGCAATGTGCTGTTGGATTCAGATTTCCAAGCCCGGGTTGCTGATTTTGGTTTTGCTAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTTGGCTACCTTGCACCAGAATATGCAATGTTAGGTAAAGCAAAAGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTTCTAGAACTAGCTAGTGGCAAAAAACCACTTGAAAAGCTTAGTTCCACAGTGAAGCGATCAATAAATGATTGGGCACTGCCATTGGCTTGTGAGAAGAAATTTAGTGAGCTTGCAGATCCAAGACTTAATGGTAACTATGTGGAGGAAGAGCTAAAAAGAGTAATTTTAGTTGCTCTATTGTGTGCTCAGAGTCAGGCTGAGAAGAGACCTACCATGCTTGAGGTGGTAGAGCTACTGAAGGGAGAGTCCAAAGATAAGCTTTCTCAGATGGAAAACAATGAACTCTTTAAGAACCCTCCAGCTGTAGGACATGATGATGGGGCATCAGCTGCTGAAGGCAGTTCAGACTTCATCTCAGAAGAGAAGGAATCAAAACATGAGTTGGAAGAAAATACAGAACCATGA 1107 0.4282 MAFCPIFCCGNASDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQTQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIVYLHHQATPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKAKESCDVYSFGILLLELASGKKPLEKLSSTVKRSINDWALPLACEKKFSELADPRLNGNYVEEELKRVILVALLCAQSQAEKRPTMLEVVELLKGESKDKLSQMENNELFKNPPAVGHDDGASAAEGSSDFISEEKESKHELEENTEP. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08229 368 PANTHER OS01G0253100 PROTEIN 21 320 - -
Seca3g08229 368 CDD STKc_IRAK 46 315 - -
Seca3g08229 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 329 - -
Seca3g08229 368 Gene3D Phosphorylase Kinase; domain 1 11 117 - -
Seca3g08229 368 SUPERFAMILY Protein kinase-like (PK-like) 22 313 IPR011009 -
Seca3g08229 368 Pfam Protein tyrosine and serine/threonine kinase 42 313 IPR001245 GO:0004672|GO:0006468
Seca3g08229 368 ProSiteProfiles Protein kinase domain profile. 40 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08229 368 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Seca3g08229 368 MobiDBLite consensus disorder prediction 350 368 - -
Seca3g08229 368 Gene3D Transferase(Phosphotransferase) domain 1 118 331 - -
Seca3g08229 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 117 - -
Seca3g08229 368 SMART serkin_6 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08229 368 MobiDBLite consensus disorder prediction 323 368 - -
Seca3g08229 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08229 Seca-Chr3 210153704 210157314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08229 28 351 Trihelix Transcription Factor Family AT1G70460 46.939 9.03e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Seca3g08229 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08229 - - gmx:100788153 697.197