Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08223 ATGGCCGTTATATCTTTCTCTTTGCTTCCACCATCCTCTACTCGTTCTTGCTTCTGTGGCGGGATCCATCTCTCTTCCCACAAGAACTTCATCTCGATTCATTCCCCTTCTTCCTTTCCTTCTTTCTCCTCAAACGCTAACTCAAATTCAAAGGTCTCTAGCAGAGGAAGGCGTTTTCACACTGTCCTTGCTGCTTCCGCTGACTACTATGCTACTCTCGGAGTTCCCAAATCCGCTACCGGCAAGGAAATCAAAGCTGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGATGTGAATAAGGAACCGGGGGCAACTGATAAGTTCAAAGAGATTAGTGCTGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTACAGTGGGAGGAGCATCAAGTGCCTATACGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACACAACGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCCCATTTGGAAACATGTGAAGTTTGTACTGCTACTGGAGCAAAGATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCCTTTGGAATGTTCTCACAGAGGTTTCAGTATGTCCAACTTGTGGAGGTGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGCATACGGCTGA 852 0.446 MAVISFSLLPPSSTRSCFCGGIHLSSHKNFISIHSPSSFPSFSSNANSNSKVSSRGRRFHTVLAASADYYATLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTQRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTATGAKIGSKMRVCSTCGGRGQVMRTEQTPFGMFSQRFQYVQLVEVMVKSYLNIVVNAMVKDAYG. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08223 283 CDD DnaJ 68 121 IPR001623 -
Seca3g08223 283 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 202 245 IPR036410 -
Seca3g08223 283 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca3g08223 283 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca3g08223 283 SMART dnaj_3 67 124 IPR001623 -
Seca3g08223 283 SUPERFAMILY Chaperone J-domain 64 174 IPR036869 -
Seca3g08223 283 Gene3D - 215 257 - -
Seca3g08223 283 Gene3D - 185 214 - -
Seca3g08223 283 Gene3D DnaJ domain 65 170 IPR036869 -
Seca3g08223 283 PRINTS DnaJ domain signature 124 143 IPR001623 -
Seca3g08223 283 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca3g08223 283 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca3g08223 283 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca3g08223 283 Pfam DnaJ domain 68 129 IPR001623 -
Seca3g08223 283 FunFam Chaperone protein dnaJ A6 chloroplastic 65 171 - -
Seca3g08223 283 CDD DnaJ_zf 215 255 IPR001305 GO:0031072|GO:0051082
Seca3g08223 283 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08223 Seca-Chr3 210041938 210050218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08223 69 131 C2H2 Transcription Factor Family AT1G74250 46.377 6.40e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08223 K03686 - gmx:100798567 406.371