Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g08178 | ATGCTCCTTAGTCCTTACTCTTCTTTCTCTGTTTTTTGTTTAAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTGATTCGGTTTGATGAGCAAGAGTCTACGGACAGTTTCTACAAGCACTACAATGGCCGCCGATTCTCATCTCTCGAGTACACTGGCTCAATTGAACATGCACAACCATCCAATACTAGTTCAACTGAACAACCTACATGTCCAGTCTGCCTTGAGCGATTAGATCAAGATACGAGTGGAATTCTTACTACCATATGCAATCATTCTTTCCATTGTTCGTGTATTTCAAAATGGGCAGATTCCTCTTGCCCTGTATGCCGCTATTGTCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTTGAAGTGGAAACCAAACGCGTCTGGGATTATGTGGGAGACAATTATGTTCATAGACTCATTCAGTCCAAAACTGATGGAAAGTTGGTTGAGCTGAACACCCACTGTGTGCATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAGCGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGATTTGCTTGCTGCTCAACTTGAAAACCAAAAATCGTATTTTGAATCCTTGTTACAAGAAGTGAAAGTGGAAGCTGAAAGAAAAATTTCCAATGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCAAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAAGTAAGTTGTAATCCACGCTTGAGAATCTCTTCTTTGGAATAA | 921 | 0.4017 | MLLSPYSSFSVFCLRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEYTGSIEHAQPSNTSSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCVHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNDLLAAQLENQKSYFESLLQEVKVEAERKISNAVQKAISLKQQKIQSKIDRCNKEKKFLDEVSCNPRLRISSLE. | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g08178 | 306 | CDD | RING-H2_BRAP2 | 70 | 113 | IPR047243 | - | |
Seca3g08178 | 306 | Coils | Coil | 255 | 275 | - | - | |
Seca3g08178 | 306 | SUPERFAMILY | RING/U-box | 71 | 115 | - | - | |
Seca3g08178 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 112 | IPR001841 | - | |
Seca3g08178 | 306 | PANTHER | BRCA1-ASSOCIATED PROTEIN | 17 | 295 | - | - | |
Seca3g08178 | 306 | Pfam | BRCA1-associated protein 2 | 13 | 51 | IPR011422 | - | |
Seca3g08178 | 306 | SUPERFAMILY | RING/U-box | 106 | 186 | - | - | |
Seca3g08178 | 306 | SMART | ring_2 | 72 | 111 | IPR001841 | - | |
Seca3g08178 | 306 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 123 | 182 | IPR001607 | GO:0008270 | |
Seca3g08178 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 195 | IPR013083 | - | |
Seca3g08178 | 306 | Pfam | Ring finger domain | 71 | 112 | IPR001841 | - | |
Seca3g08178 | 306 | ProSiteProfiles | Zinc finger UBP-type profile. | 106 | 199 | IPR001607 | GO:0008270 | |
Seca3g08178 | 306 | SMART | Zf_UBP_1 | 122 | 171 | IPR001607 | GO:0008270 | |
Seca3g08178 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 113 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g08178 | Seca-Chr3 | 208765377 | 208767516 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g08178 | 68 | 112 | C3H Transcription Factor Family | AT1G72220 | 48.936 | 1.38e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g08178 | K10632 | - | gmx:100794688 | 549.28 |