Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08178 ATGCTCCTTAGTCCTTACTCTTCTTTCTCTGTTTTTTGTTTAAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTGATTCGGTTTGATGAGCAAGAGTCTACGGACAGTTTCTACAAGCACTACAATGGCCGCCGATTCTCATCTCTCGAGTACACTGGCTCAATTGAACATGCACAACCATCCAATACTAGTTCAACTGAACAACCTACATGTCCAGTCTGCCTTGAGCGATTAGATCAAGATACGAGTGGAATTCTTACTACCATATGCAATCATTCTTTCCATTGTTCGTGTATTTCAAAATGGGCAGATTCCTCTTGCCCTGTATGCCGCTATTGTCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTTGAAGTGGAAACCAAACGCGTCTGGGATTATGTGGGAGACAATTATGTTCATAGACTCATTCAGTCCAAAACTGATGGAAAGTTGGTTGAGCTGAACACCCACTGTGTGCATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAGCGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGATTTGCTTGCTGCTCAACTTGAAAACCAAAAATCGTATTTTGAATCCTTGTTACAAGAAGTGAAAGTGGAAGCTGAAAGAAAAATTTCCAATGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCAAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAAGTAAGTTGTAATCCACGCTTGAGAATCTCTTCTTTGGAATAA 921 0.4017 MLLSPYSSFSVFCLRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEYTGSIEHAQPSNTSSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCVHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNDLLAAQLENQKSYFESLLQEVKVEAERKISNAVQKAISLKQQKIQSKIDRCNKEKKFLDEVSCNPRLRISSLE. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08178 306 CDD RING-H2_BRAP2 70 113 IPR047243 -
Seca3g08178 306 Coils Coil 255 275 - -
Seca3g08178 306 SUPERFAMILY RING/U-box 71 115 - -
Seca3g08178 306 ProSiteProfiles Zinc finger RING-type profile. 72 112 IPR001841 -
Seca3g08178 306 PANTHER BRCA1-ASSOCIATED PROTEIN 17 295 - -
Seca3g08178 306 Pfam BRCA1-associated protein 2 13 51 IPR011422 -
Seca3g08178 306 SUPERFAMILY RING/U-box 106 186 - -
Seca3g08178 306 SMART ring_2 72 111 IPR001841 -
Seca3g08178 306 Pfam Zn-finger in ubiquitin-hydrolases and other protein 123 182 IPR001607 GO:0008270
Seca3g08178 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 195 IPR013083 -
Seca3g08178 306 Pfam Ring finger domain 71 112 IPR001841 -
Seca3g08178 306 ProSiteProfiles Zinc finger UBP-type profile. 106 199 IPR001607 GO:0008270
Seca3g08178 306 SMART Zf_UBP_1 122 171 IPR001607 GO:0008270
Seca3g08178 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08178 Seca-Chr3 208765377 208767516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08178 68 112 C3H Transcription Factor Family AT1G72220 48.936 1.38e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08178 K10632 - gmx:100794688 549.28