Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08176 ATGGAGAGCAACCCCTGGCGCAAATGGTCTTCCGATATGGAAATGGATGATCATGTCAATGAATGCTTGTGCCACACCAACACTTTTGATGAAGAGTTCCTCAGAGATATCCTGCTGCAGCCACAAGATTCCACTGCCCCTGTTATTGGCAGTAGTAGTTCTTTATTATTTGGCCAAACAAGCTTTGAGAGGCCAATTAACACCAACACCAACACCAACAACAACCTTCAGGTGAATAAGAACAACTCATCACCCATCATCTCTCATTCTCAACAACCAGAATTAAAGCCACTAGCCTCTGCTCCTCCAACATCTTTTATACTTTCTTTTGACAAATCCACTGCTTTGTTACCAACTGATCATCACCATGATCATCCTTCCCCTGTTTGGAATAAAGAGGTTTCTCAATCCCAATTGGGAAATAATAATCATCACCACCCCACTGATTCTTTGCCTTTGTCATCATCATCATCAAGGGCCAATCAAGGAACCAAGAAGACTAGAAGTGCTTCTGAGACATTAGATCACATTATGTCAGAGAGAAATAGGAGACAGGAACTCACAAGGAAGTTCATAGCACTTTCAGCCACAATACCTGGCTTGAAGAAGCTGGACAAGGCCCATGTACTAAGAGAAGCTATCAATTACGTGAAACAACTTCAAGAACGTGTAAAAGAGCTAGAAGAAGATATCAAGAAGAACGGTGTGGAATCAGTGATTACCATAACAAGATCTCATCTCTGTATTGAAGATGACACTGCCTTTGGTGAAACCAAAACTGATGAATGCTATGGGCCCAATGAAGCACTCCCTGAGGTTGAAGCTAGAGTCCTAGGGAAGGAAGTGTTAATCAAAATTCACTGTGGGAAGCAAAAGGGTATTCTGCTCAAAATAATGTCCCAGCTTGAAAGTCTTCATCTCTCCATTTCCACTAGCAACGTCTTGCCATTTGGGAATACTCTTGACATCACCATCATTGCTCAGATGGGTGACAAATACAACTTGATAGTGAAGGATCTAGTGAAAAAGCTGAGACTAGTGGCTACTCTGCAGGCATGCGATGTGAAACAATGA 1074 0.4218 MESNPWRKWSSDMEMDDHVNECLCHTNTFDEEFLRDILLQPQDSTAPVIGSSSSLLFGQTSFERPINTNTNTNNNLQVNKNNSSPIISHSQQPELKPLASAPPTSFILSFDKSTALLPTDHHHDHPSPVWNKEVSQSQLGNNNHHHPTDSLPLSSSSSRANQGTKKTRSASETLDHIMSERNRRQELTRKFIALSATIPGLKKLDKAHVLREAINYVKQLQERVKELEEDIKKNGVESVITITRSHLCIEDDTAFGETKTDECYGPNEALPEVEARVLGKEVLIKIHCGKQKGILLKIMSQLESLHLSISTSNVLPFGNTLDITIIAQMGDKYNLIVKDLVKKLRLVATLQACDVKQ. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08176 357 MobiDBLite consensus disorder prediction 66 100 - -
Seca3g08176 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Seca3g08176 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 237 IPR036638 GO:0046983
Seca3g08176 357 SMART finulus 177 226 IPR011598 GO:0046983
Seca3g08176 357 MobiDBLite consensus disorder prediction 130 168 - -
Seca3g08176 357 MobiDBLite consensus disorder prediction 66 98 - -
Seca3g08176 357 Coils Coil 210 237 - -
Seca3g08176 357 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983
Seca3g08176 357 Gene3D - 161 235 IPR036638 GO:0046983
Seca3g08176 357 PANTHER BHLH TRANSCRIPTION FACTOR 46 348 - -
Seca3g08176 357 MobiDBLite consensus disorder prediction 117 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08176 Seca-Chr3 208759201 208762769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08176 152 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.949 1.78e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08176 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08176 - - gmx:100809223 389.808