Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08175 ATGAATGGTTTTTTGAACATTGATGATGAAGAGCATCAGCAAGTAAACTTGTCTTGTAGAACTGAAACACAATCTCATCACTCTCTGCAGTACTACCCTTCTTGCTTAGGCTTCAAGGGCCAGTCGAATGTAGTTTGCTGGGGGGGACCATCGCTAGAGGAATTAGGCCATTCTTCCTCAAAAAGGACCCTAAGCTTTGAACCCATCAGTGTGACCCAAGGCCAAGGAAGAAAGAGGGGTAGAAGCTCTTCAGAGATACAGGATCACATAATGGCTGAGAGAAAAAGGAGGCAGGAAATGGCAGAGAGATTCATAACACTTTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTTCTTCGGGAAGCTATTAATTACGTGAAACAACTTCAAGAACGCATTGCAGTGCTGGAAGAAGAAAGCAAGCAAAAAAGTACGACGTCAATAATCTCTATTAAGAAATCTCACTCTCATCCACTTTCCGAAACAAACTCCTTTGGTTCCAACAATCAAGTGCTCCCTCAAGTTGAAGCAATAGGCTTAGAGCCTGCAGAGAAACAACTACTTATTAGAGTCCATTGTGAGAAACGAAATGGCATCTTGCTCAAAATATTGGCCCTACTTGAAAAAATACACCTCTCTGTTGCCAGTAGCAGTGTACTGTCATTTGGGAAAAATACTCTCAGCGTTACCATTATTGCTCAGGTAAAGGGTGAGGAATATAACATGACAGGAGAAGAATTGGTAAAAAGCTTGAGACTGGGTCTTCTCGAAGTATATGACATGCACATGTGA 804 0.4204 MNGFLNIDDEEHQQVNLSCRTETQSHHSLQYYPSCLGFKGQSNVVCWGGPSLEELGHSSSKRTLSFEPISVTQGQGRKRGRSSSEIQDHIMAERKRRQEMAERFITLSAIIPGLKKIDKASVLREAINYVKQLQERIAVLEEESKQKSTTSIISIKKSHSHPLSETNSFGSNNQVLPQVEAIGLEPAEKQLLIRVHCEKRNGILLKILALLEKIHLSVASSSVLSFGKNTLSVTIIAQVKGEEYNMTGEELVKSLRLGLLEVYDMHM. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08175 267 SMART finulus 90 139 IPR011598 GO:0046983
Seca3g08175 267 Gene3D - 83 154 IPR036638 GO:0046983
Seca3g08175 267 PANTHER BHLH TRANSCRIPTION FACTOR 61 260 - -
Seca3g08175 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 149 IPR036638 GO:0046983
Seca3g08175 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Seca3g08175 267 Pfam Helix-loop-helix DNA-binding domain 88 134 IPR011598 GO:0046983
Seca3g08175 267 Coils Coil 123 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08175 Seca-Chr3 208676616 208680571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08175 75 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.077 2.84e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08175 HLH 6.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08175 - - gmx:100809351 207.223