Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08174 ATGGAAAAGTCATGGGAAAATTGGCCTCTTCATATGGAAATGGGTCATGATAAGGATCTGTTCCAGCAGTGCCAAAGTGGCGATGATGATGAGTTCCTCAGAGACATCCTACAGCAACCAGCTTTGTCTGCTGAAAGTGAAAGCCAAGCTTTCACCCATAATAACACCTTCACCGCCACAGTTGCCGGAGCCACCGTGACAACCACCACCGACGGCAGCAGTTTGTCTTCCGATGAGATAATCTGCTCCGATTTTCCTGGAAAAAAGCCTCGTCCCTCGTCGGCTCCGAGGACGTACATTTTGTCCTTCGATAACTCCACAATAATACCAGCAACACCAGAACCTGTCGGCCAGAGTACGGGTAACCGTTCTTCTAAATCTAATTCGCCTCTGCCATCGAAAAAACGGTTAATGGAAAATCCAAACAGTGAACCGAAACCAAGGGGTAACCAAGGGGGAAAGAAGAGTAGAAGCGATTCGCAGATTATGGATCACATATTGGCGGAGAGAAAAAGGAGACAGGAACTGACAGAGAAATTCATAGCACTATCAGCTACTATTCCGGGCTTGAAGAAGACGGACAAGACTTCTATACTTCGCGAAGCTATCAGTTATATGAAAGAACTTCAAGAACGTGTGACGGAGCTTGAACAGCGAAACAAGAGAGGCAAAGAATCAAAGGTAATCCTGAAGAAGACTAATGATCATCTGTGTGCAAATGAAGACACGACTTCAAGTGAAACAAATTCTGATGAGGATTGCTGTAGACGACCCAGCGGATTGCTCCCTGATGTTGAAGCAAGAGTGTTGGAGAATGAAGTACTCATTGAGATCCACTGTGAGAAGGAAAATGGCATTCAGCTCAAGATATTGGAGTTGCTTGAAAATCTTCATCTCTATGTCACTGGCAGCAGTGTGTTGCAGTTTGGGAATTCAACTCTTGGCATTACTATCATCGCTCAGATGGGTGACGGGCACAGAATGACGGTCAACGTCAACGATCTAGTGAAAAGCCTAAAGCAAGTGCTAATGAATCGCAAATACAAATAG 1050 0.4514 MEKSWENWPLHMEMGHDKDLFQQCQSGDDDEFLRDILQQPALSAESESQAFTHNNTFTATVAGATVTTTTDGSSLSSDEIICSDFPGKKPRPSSAPRTYILSFDNSTIIPATPEPVGQSTGNRSSKSNSPLPSKKRLMENPNSEPKPRGNQGGKKSRSDSQIMDHILAERKRRQELTEKFIALSATIPGLKKTDKTSILREAISYMKELQERVTELEQRNKRGKESKVILKKTNDHLCANEDTTSSETNSDEDCCRRPSGLLPDVEARVLENEVLIEIHCEKENGIQLKILELLENLHLYVTGSSVLQFGNSTLGITIIAQMGDGHRMTVNVNDLVKSLKQVLMNRKYK. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08174 349 Coils Coil 199 226 - -
Seca3g08174 349 PANTHER BHLH TRANSCRIPTION FACTOR 39 345 - -
Seca3g08174 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Seca3g08174 349 MobiDBLite consensus disorder prediction 106 161 - -
Seca3g08174 349 SMART finulus 166 215 IPR011598 GO:0046983
Seca3g08174 349 Pfam Helix-loop-helix DNA-binding domain 165 210 IPR011598 GO:0046983
Seca3g08174 349 Gene3D - 151 239 IPR036638 GO:0046983
Seca3g08174 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 225 IPR036638 GO:0046983
Seca3g08174 349 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08174 Seca-Chr3 208547697 208552766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08174 156 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.917 1.80e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08174 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08174 - - aprc:113856039 373.629