Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08171 ATGGCAGACCCCACTTCATTTCCGGTCTCCCACTTTCCAGTGGAGCAGTCATGGGACACTTTGCCTCTTCACATGGAAATGGGTGATGATGAAAAGCATCTATTTGAACAGTGCCACAGTAGTGATGATGAAGAGTTCTTGAGAGACATCCTACAGCAACCAGCTTTGTCTTTTGAAGAATGTCAAAGTGAATCTTTTGTCCAAAATAACAACTTCACTGCCACAACCACAACAAATGAGATGGCGTGCTCCTCTCAGAAAAGGCTTCATCCCTCATCCTCGTCTCCAAAGACATTCATTCTGTCTTTCGATAAATGTAAAATAATACCAGCTTCACCAGAACCTCTCCTTGGTCATGAACGAAAGGGAGGGAAGGGTACACGTTTTTCTAAATCTAATTCATCAACTGTGAAATCAAGAAAAGGGACCCTGGAACTGGAAAATCTCAAGTTTGGACCAAAACAGAGTGCCATCCAAGGAGGAAAGCAAAGTAGGAGCGGTTCCAACACTGTGGATCACGTTATTGCAGAGAGAAAAAGGAGACAGGACTTGGCAGAGAAGTTCATAGCACTTTCATCCATTGTTCCGGGTTTGAAGAAGATAGACAAGACTTCTATAGTATGTGAAACTATCAGTTATGTGAAACAACTTCACGTGCGTGTGACGGAGCTAGAACAACCGCGAGACAAGACAGGCAATGAATCACTGGCATACCTCAAGAAGACTAGTCTGTGTGGTGCAAATGAAACAAAGTCTGAGGATTGTTGTAGGCCCAGTGAATTGCTCCCTGATGTTAAAGCAAGAGTGTTGAAGAATGAGGTAATTATTTGGATCCATTGTAAGAAGGAAAATGGCATTGAGCTAAAAATATTGGACCTGCTTGAAAATCTCCAATTGTGTGTCACCGGCAGCAGCGTATTGCCGTTTGGGAATTCAACTCTGAACATTACTATCCTCGCTCAGGTACGCAACGCCTATTTCATGTTCTACATTAATATAGTACATGTTAATATGCCTTCAATCACAAGCATAACACTTATTATATTTAAAATATGA 1056 0.4176 MADPTSFPVSHFPVEQSWDTLPLHMEMGDDEKHLFEQCHSSDDEEFLRDILQQPALSFEECQSESFVQNNNFTATTTTNEMACSSQKRLHPSSSSPKTFILSFDKCKIIPASPEPLLGHERKGGKGTRFSKSNSSTVKSRKGTLELENLKFGPKQSAIQGGKQSRSGSNTVDHVIAERKRRQDLAEKFIALSSIVPGLKKIDKTSIVCETISYVKQLHVRVTELEQPRDKTGNESLAYLKKTSLCGANETKSEDCCRPSELLPDVKARVLKNEVIIWIHCKKENGIELKILDLLENLQLCVTGSSVLPFGNSTLNITILAQVRNAYFMFYINIVHVNMPSITSITLIIFKI. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08171 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Seca3g08171 351 MobiDBLite consensus disorder prediction 128 142 - -
Seca3g08171 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
Seca3g08171 351 PANTHER BHLH TRANSCRIPTION FACTOR 56 328 - -
Seca3g08171 351 Gene3D - 161 233 IPR036638 GO:0046983
Seca3g08171 351 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983
Seca3g08171 351 MobiDBLite consensus disorder prediction 114 142 - -
Seca3g08171 351 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08171 Seca-Chr3 208457599 208461789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08171 152 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 40.957 1.89e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08171 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08171 - - aprc:113856039 276.944