Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08170 ATGACTCCGATCATCAAACTCGAAGAGGATGAAGAAAATGTTGTGAAGTTAGGCGCTGGATATATAGGCCGTACTCTGAACCCTAAGCGTAAAGCAGAACAAGGGCTTCCTCCCATTCTCTCAGTCGAGCTCAAGATCGGTGGTTCCTCCGTTCCTGTTGCTGACCTCGTTGATGACTCTGATGTATACCCAACTTCTTCTGCTCGCGACACGTTGCTGCATACTTGCTTCTCTTGCTCTGCCCCTAAGTTCGTTCACGAGCATATTGTTCCAGATCTCTGCATCACCGTTACTTCCGATTTCGTCCATTCAAACACCAGCATCGGCGCCACTGCGAAGGTCTTCATCAGAGGCATGGAGATCACGCAACCTGATCTCTTCAATAACGATATGGTTGTGGTTCACAGTCTTCAAGGTTTTGTCTCTCCACTATCTCTGTTCTCTTGTGATGTAGAGAGGATGACCCCACTCTCCTTCCCGTTCCATCCCGATCATCGCTCCAGTCAGCATCTCCACAATCCCGGTGCCACAATGCAGCCTTCTATAATGCGCCTCATGCTCAGAGACGCCATTCTCAGGCTCCGTAGCAACAGGTTCAACATACTAGCCCTCACCATGAAGCTCCTGTTTGATATAAAGCCTGAAAGGAATATCCAACTACTGCTTGATGAAATGCCTAAAACTGTTTATGCACCGTTTGAAATTGCTTCTCACCTTCCATTTGTTGGAATAATTGCAGCAGTTATGCCTTGTGTTGTCATGACCTTTGCAGGCTATGGTAAATTCATAATGGTTCCTTCACTCCTGAGAGGATTGAGGTACATACACTCTGCCAACGTTTTTTACAAAGATCTAAAACCAAGCAATTTACTTCTGAATTATTCAGAATATACTGCAACTATTGATATATGGTCGGTTGGTTGCATTTTGCTGGAGATAATTAGAAGGGGTCTTTTATTTCTTGGCAAAGATCACTATGTTCAGCAGTTGGCGTTCATAACTGAATTATTAGTAGGCATAGCCATTGTTTCAGGTCTAGCTTTGACGGTTCTTACATATTCAGTTGGTCATGTCTCTAGTGGCCATTTCAATCCTACAGTCATAATTGCTCTGGCAAATGTCCAAAAAATTCAATTGAAACTTGTGCCTTCTTATGTGTTGGGAAATCGATATGAATCTAGCACTCTGTTTGTGGCTAATTGTCTCATAGATATGTCTTCCAAATATGGAGATATTGATTCTGCTGGTTTCGCTGGCAGTGATAGTCATGACAGTGTTGGTGATGGTGGTGGCAGCCATGGTTTTGCCAGTAATGGATATGATGGAAGTGTTGTTGATGGCAGTGGTCAATTGGATGGTGTAGAGCAACATGATGAAATTTACAGCTTTTGGTGGTTTGTTTTTGGCAGCTCCTAG 1416 0.4371 MTPIIKLEEDEENVVKLGAGYIGRTLNPKRKAEQGLPPILSVELKIGGSSVPVADLVDDSDVYPTSSARDTLLHTCFSCSAPKFVHEHIVPDLCITVTSDFVHSNTSIGATAKVFIRGMEITQPDLFNNDMVVVHSLQGFVSPLSLFSCDVERMTPLSFPFHPDHRSSQHLHNPGATMQPSIMRLMLRDAILRLRSNRFNILALTMKLLFDIKPERNIQLLLDEMPKTVYAPFEIASHLPFVGIIAAVMPCVVMTFAGYGKFIMVPSLLRGLRYIHSANVFYKDLKPSNLLLNYSEYTATIDIWSVGCILLEIIRRGLLFLGKDHYVQQLAFITELLVGIAIVSGLALTVLTYSVGHVSSGHFNPTVIIALANVQKIQLKLVPSYVLGNRYESSTLFVANCLIDMSSKYGDIDSAGFAGSDSHDSVGDGGGSHGFASNGYDGSVVDGSGQLDGVEQHDEIYSFWWFVFGSS. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08170 471 Pfam Major intrinsic protein 332 388 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08170 471 SUPERFAMILY Aquaporin-like 337 387 IPR023271 -
Seca3g08170 471 Gene3D Transferase(Phosphotransferase) domain 1 293 337 - -
Seca3g08170 471 Gene3D Transferase(Phosphotransferase) domain 1 266 292 - -
Seca3g08170 471 Gene3D - 16 81 IPR029068 -
Seca3g08170 471 PANTHER OS02G0491300 PROTEIN-RELATED 90 212 - -
Seca3g08170 471 SUPERFAMILY Protein kinase-like (PK-like) 263 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08170 Seca-Chr3 208453548 208455080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08170 267 337 MAP Kinase Gene Family AT1G07880 48.182 1.81e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca3g08170 MIP 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08170 - - tpra:123913794 192.971