Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08167 ATGAACGGTGAAATATTCATACAAACAGCCCCCACTACCACCTTTCTTCCCAAATCAAACCCCGCCATAACCCACTTCACATTTGAACCAATTTCCTCCACAAACCACCTCATCAACTCCTTCTCTCCTCCATGCAACCAAACAAGTAGTGATCTCGAAGGAATCGCTGCCATTGTTGGAGAGCATGTCCTCTTCGGAGGCAAACAACACAATAGCACTCAAAACAACAATGAAACAAGTTCCAAAACCCCAAAGAAAGAAGAGAAAACCGGTCACAAGAATACCAATAACAATAACATTTCTTCTGTGAGTAAGAGATACAGAGGAGTGAGGAAGAGACCCTGGGGGAGGTGGTCAGCGGAGATACGCGACAGAATCGGGCGGTGCCGACACTGGCTAGGAACTTTTGACACTGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCAGCGAGGCGCTTGAGGGGCTCCAAAGCTCGAACAAACTTTGAGATACCCTCTGTTTTGCCAACTTCCTCTTCTTCCGAAGTGAAAAGGGGGGTCAGTGGTGACGGTGGTTCTCGTAAGGCTAAAGGTGTACGTGGCAGTGGTAGGAAGTGCTCTGTTGTTACCTCTGTTGCTCAGTTGTTCAGTGGGGTGCCTGAAATTGTAAGAGGTAGTAATGGTGATGAGAAAGAAAGCAAAGGGTTGGAGCTGGACTTGAAACTTGGTGTAACCTTTGTTGGTAAAAATTAA 732 0.4795 MNGEIFIQTAPTTTFLPKSNPAITHFTFEPISSTNHLINSFSPPCNQTSSDLEGIAAIVGEHVLFGGKQHNSTQNNNETSSKTPKKEEKTGHKNTNNNNISSVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPTSSSSEVKRGVSGDGGSRKAKGVRGSGRKCSVVTSVAQLFSGVPEIVRGSNGDEKESKGLELDLKLGVTFVGKN. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08167 243 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Seca3g08167 243 MobiDBLite consensus disorder prediction 67 102 - -
Seca3g08167 243 CDD AP2 105 164 IPR001471 GO:0003700|GO:0006355
Seca3g08167 243 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 83 176 - -
Seca3g08167 243 MobiDBLite consensus disorder prediction 169 194 - -
Seca3g08167 243 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Seca3g08167 243 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Seca3g08167 243 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Seca3g08167 243 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Seca3g08167 243 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Seca3g08167 243 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Seca3g08167 243 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08167 Seca-Chr3 208377168 208377899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08167 16 169 AP2-EREBP Transcription Factor Family AT1G80580 51.875 4.01e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08167 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08167 - - aip:107614619 211.46