Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08163 ATGAATCTTCTTGTTCTGTTTTTTCCCATTTGGGTGCTGAGCATTTCTCTTTCATCAGCAATTCTTCATGCTGCAGCATCCCCCATTTTTGTCTCTCAATCTTCTGCAAATGCACAAGCAACATCTCCAGGAATTCAGGAGGTTAGAATAGTGCACCACCAGAATTTGAACAAGAGAATTCTAATGGCACTAATTGCTTGTTCTACTCTTCTTGGTGGAACCTTCCTATTCTTATTATATGTCTGGTTCCGTCGACATAAAAACTTAAGAAGCTCCAATATTAAAAGCCATGGAACCATGGAGGCTGCAAAAGGGGAAGCCTTAAGCACTATTGATGCTAAAGTTAACTACTCAAGGGTGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTTTCAGTTGTTAGAAGCTGCAACAAACAACTTTAGCACTAGTAATGTTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGGGCTTGTCTTGAAGAACATTTCCGGGCAGCTGTGAAAAAAGCAGATAGTAATGCTGATAGAGAATTTGAGGTGATGTGCACTGAGTTGCAGAATGAAGTGAGTTGGTTGAGCAAGATTCGGCATCAGAATATCATTAAACTTTTGGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGACAATGGATCTCTGGAAACTCAATTGCATGGGCCTAATCGTGGATCATCTTTAACTTGGCATCTCCGGTTAAGAATTGCAATTGATGTTGCCAGAGCATTAGAATATCTCCATGAGCACTCCAATCCTCCTGTAGTTCATAGAGACCTAAAATCTTCTAATGTTCTTTTGGATTCTAACTTGAATGCCAAGCTATCAGATTTTGGACTTGCTATAGCTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATACGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGGGTTCTTCTTCTAGAACTTCTAACTGGAAGAAAGCCCATGGAGAACATGTCTTCAGACCAATATCAATCCCTAGTCTCATGGGCCATGCCTCAACTAACTGATAGATCAAAGCTTCCAAGTATTCTGGATCCTGTCATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTGTGTGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGATGTTCTGCATTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTTAGAGTTACAGAACCAATCCGCTCAGAGAACTCCAATTGA 1320 0.4068 MNLLVLFFPIWVLSISLSSAILHAAASPIFVSQSSANAQATSPGIQEVRIVHHQNLNKRILMALIACSTLLGGTFLFLLYVWFRRHKNLRSSNIKSHGTMEAAKGEALSTIDAKVNYSRVADKKSSVAIFDFQLLEAATNNFSTSNVMGESGSRIVYRACLEEHFRAAVKKADSNADREFEVMCTELQNEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMDNGSLETQLHGPNRGSSLTWHLRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNLNAKLSDFGLAIASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVLLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPIRSENSN. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08163 439 Gene3D Transferase(Phosphotransferase) domain 1 222 420 - -
Seca3g08163 439 SMART serkin_6 142 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08163 439 Gene3D Phosphorylase Kinase; domain 1 103 221 - -
Seca3g08163 439 ProSiteProfiles Protein kinase domain profile. 142 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08163 439 SUPERFAMILY Protein kinase-like (PK-like) 122 415 IPR011009 -
Seca3g08163 439 FunFam probable receptor-like protein kinase At1g80640 222 420 - -
Seca3g08163 439 PANTHER OS01G0750732 PROTEIN 32 418 - -
Seca3g08163 439 Pfam Protein kinase domain 146 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08163 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08163 Seca-Chr3 208245518 208249375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08163 1 361 Receptor kinase-like Gene Family AT1G80640 46.113 6.25e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca3g08163 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08163 - - gmx:100811188 701.434