Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08153 ATGATAGTGGAGATTGTTGTCATGTACCCCATTCAGCACCGCAAGTATAGGAAGGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCCATGCCAACAGTTTTGTCAGTGACAATGGCTATTGGTTCCCATAAGCTGTCTGAGCAAGGTGCTATCACAAAAAGAATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGTAGTGACAAGACTGGCACTCTAACACTCAACAAGCTTACTGTAGACAAGAGTTTGATTGAGGTTTTCTCAAGAGATGCTGACAAGGACACAGTGATTTTACTTGGAGCTAGGGCCTCAAGGGTAGAGAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGATCCAAAGGAGGCTAGAGAAGGCATTACAGAGGTGCATTTCCTACCCTTCAATCCAGTAGACAAGCGTACAGCCATAACATACTATGATTCTGAGGGTAATTGGTACCGAGTAAGCAAAGGAGCACCAGAGCAGATTATTGAACTCTGCAATCTTAGAGAAGATGTGAAGAAGAAAGCTCTTTCCATCATTGATAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTATTTCCAAACAAGAAATTCCAGAGAAGAACAAGGATGGTGCAGGAGGACCATGGCAATTTGTGGGTTTGTTACCTCTCTTTGACCCACCAAGGCATGATAGTGCAGAGACTATCAAGCGTGCCCTTGTTCTTGGAGTGAATGTTAAGATGATCACTGGTGATCAGTTAGCTATTGGCAAAGAAACTGGTCGTAGGCTTGGTATGGGATGTAACATGTACCCTTCATCTTCCCTCCTTGGTGATCACAAAGATGAGTCTATTGCTGCTCTTCCAGTTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTGAAGAGACTTCAAGAGAGGAAACACATATGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCTTTGAAAAGAGCAGATATTGGAATTGCAGTGGCTGATGCAACAGATGCAGCTAGAGGTGCATCTGACATAGTCCTCACTGAGCCTGGTTTGAGTGTCATAGTGCATGCAGTGTTGACAAGCAGAGCAATTTTCCAGAGAATGAAGAACTACACTATTTATGCTGTTTCTATTACAATCCGAATAGTACTTGGCTTTATGCTCCTTGCTCTCATTTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTAAATGATGGGACAATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGTTGAGAGAGATTTTTGCCACAGGTGTTGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTCATTCCTCTAATTTCTTCTCGGACAAATTTGGAGTGAGATCTATTAGGAATAACCACAATGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAAGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTACATTGAACGTCCTGGCATTCTTCTTATTGTTGCCTTTTTGATAGCACAATTGATTGCCACAATCATAGCTGTGTATGCAAACTGGGGATTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCCTTGTTTTTTATGTCCCCATGGATATCCTTAAGTTCATCATAAGATATGCATTGAGTGGCAAGGCATGGAATACTGTTACTGAAAGCAGGTTGTGTTGTGATATGCAGATTGCTTTCACCTCTAAGAAGGACTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTTCATGGTTTGAATCCTCCTGAAACAGAAGAAATGTTAAATGAAAAGAACAACTATAGGGAGTTGTCTGAACTTGCAGAACAAGCTAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGGCATGTTGAGTCTGTTGTGAAACTGAAGGGACTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA 2106 0.4292 MIVEIVVMYPIQHRKYRKGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSRDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTAITYYDSEGNWYRVSKGAPEQIIELCNLREDVKKKALSIIDKFADRGLRSLAISKQEIPEKNKDGAGGPWQFVGLLPLFDPPRHDSAETIKRALVLGVNVKMITGDQLAIGKETGRRLGMGCNMYPSSSLLGDHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVHAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGVVLGAYLAVMTVVFFWAAHSSNFFSDKFGVRSIRNNHNELTAAVYLQVSIVSQALIFVTRSRSWSYIERPGILLIVAFLIAQLIATIIAVYANWGFAKIKGIGWGWAGVIWLYSLVFYVPMDILKFIIRYALSGKAWNTVTESRLCCDMQIAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08153 701 PRINTS H+-transporting ATPase (proton pump) signature 504 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 PRINTS H+-transporting ATPase (proton pump) signature 332 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 PRINTS H+-transporting ATPase (proton pump) signature 189 207 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 PRINTS H+-transporting ATPase (proton pump) signature 304 320 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 PRINTS H+-transporting ATPase (proton pump) signature 363 388 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 591 IPR023298 -
Seca3g08153 701 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 550 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca3g08153 701 FunFam Plasma membrane ATPase 225 380 - -
Seca3g08153 701 SFLD p-type atpase 55 384 IPR044492 -
Seca3g08153 701 FunFam ATPase 4 plasma membrane-type 317 559 - -
Seca3g08153 701 NCBIfam HAD-IC family P-type ATPase 307 417 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08153 701 Gene3D - 70 369 IPR023214 -
Seca3g08153 701 Gene3D - 85 232 IPR023299 GO:0000166
Seca3g08153 701 PANTHER CALCIUM-TRANSPORTING ATPASE 1 633 - -
Seca3g08153 701 Coils Coil 645 672 - -
Seca3g08153 701 ProSitePatterns E1-E2 ATPases phosphorylation site. 75 81 IPR018303 -
Seca3g08153 701 PRINTS P-type cation-transporting ATPase superfamily signature 73 87 - -
Seca3g08153 701 PRINTS P-type cation-transporting ATPase superfamily signature 227 238 - -
Seca3g08153 701 PRINTS P-type cation-transporting ATPase superfamily signature 332 351 - -
Seca3g08153 701 PRINTS P-type cation-transporting ATPase superfamily signature 249 259 - -
Seca3g08153 701 PRINTS P-type cation-transporting ATPase superfamily signature 355 367 - -
Seca3g08153 701 Pfam haloacid dehalogenase-like hydrolase 69 346 - -
Seca3g08153 701 Gene3D - 1 559 - -
Seca3g08153 701 SUPERFAMILY HAD-like 69 380 IPR036412 -
Seca3g08153 701 SFLD C1.7: P-type atpase like 55 384 - -
Seca3g08153 701 FunFam Plasma membrane ATPase 85 232 - -
Seca3g08153 701 Gene3D - 650 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08153 Seca-Chr3 208164823 208168483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08153 1 701 Primary Pumps ATPases AT3G42640 80.171 0.0 1183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08153 K01535 - gmx:100782329 1271.91