Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08152 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAAACTAGAATATGGTTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCTTATGATGAAGCAGCAAGGCTCATGTGTGGTCCAAAAGCACGCACTAATTTCCCATACAATCCCAATGAGACACAATCCTCTTCATCTAAGCTTCTCTCTGCAACTTTGACAGCAAAACTACACAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGTCCAAGCAGAAACAACCACAGAAAGAGCCTCAACAAGGATCCAACCTCCCATTTGCCTATGGCAGTGACATTGCTGGAACAAGCACTGAGAAGAGACATGATGAGGAACTGCAGTGGCTAGAAGGGAATTGGGTGAGTGAGGAAGGACAAGTTGAAGTAGCAGAGCAGCAATTTCAGCCAGTTCTTGAGGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTCATTATGGGTCAATTGAGCTTAGTTCTGTTGGCTCAGCTTAA 561 0.4599 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNETQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQPQKEPQQGSNLPFAYGSDIAGTSTEKRHDEELQWLEGNWVSEEGQVEVAEQQFQPVLEDDHIEQMIQELLHYGSIELSSVGSA. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08152 186 MobiDBLite consensus disorder prediction 96 120 - -
Seca3g08152 186 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 MobiDBLite consensus disorder prediction 96 123 - -
Seca3g08152 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 125 - -
Seca3g08152 186 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Seca3g08152 186 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Seca3g08152 186 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Seca3g08152 186 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08152 Seca-Chr3 208142290 208142999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08152 1 183 AP2-EREBP Transcription Factor Family AT5G25190 63.684 3.08e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08152 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08152 - - gmx:100527365 279.256