Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g08150 | ATGGACCTTCCAAGGTCAGAGCCATGTCCATCTGATAACTTGAACACCTCATTTTCACAGTGCTCAAAGGCTATACCTTCTTCAATGGACACTCAAACAGAGAAGAGACAGACACAAAAGGAAGATAAACAACCCCAACATGAGTCACCTCCACATCTTCAACTAGATCTAAGTCTCCCTAGTAAAGATTCATCAGGTGATGATGACTCAAAGCCAGAACTCAATCTTATCAACTGTTTTGACACAGATTTGTCCATGAACTCCTCAGAATCTGTTCATGGTAATGAATTATTAGAGCCACGGATTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCACAAGCACTTGGAGGACACCAAAATGCACATAAACGTGAAAGGACTTTGGCAAAAAGAGGACACAGAGCTGGTTCTTCAGTAGATTATGGACAAAGGTACTCAAGTTTAGCTTCTCTGCCTTTGCATGGCTCTTGTAACAGATCACTTGGAATTCAGGTGCATTCTATGATTCACAAACCCTCTTATCAAACACCCTTTTTGGGTTTGTTTCGTTCCCGTCCTCAAAATGGGTGGCAGAAGCAACCTACTATGTATTCACAACCTGCAATTGGGAATTTTCATGTTGGAGCAGAAACTGAATCATCTTTGGCTGCTCCTAGCATTCCAAGGTTAGGGAAGTTTTCTCCAAGGTTTGTGCAAGAGGGTTTTGGAGGTTATTGGTTGGGTGGTAGTGGTACTATTAACCATTTGAAGACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA | 807 | 0.4151 | MDLPRSEPCPSDNLNTSFSQCSKAIPSSMDTQTEKRQTQKEDKQPQHESPPHLQLDLSLPSKDSSGDDDSKPELNLINCFDTDLSMNSSESVHGNELLEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAGSSVDYGQRYSSLASLPLHGSCNRSLGIQVHSMIHKPSYQTPFLGLFRSRPQNGWQKQPTMYSQPAIGNFHVGAETESSLAAPSIPRLGKFSPRFVQEGFGGYWLGGSGTINHLKTKQEELQKLDLSLKL. | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g08150 | 268 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
Seca3g08150 | 268 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 103 | 130 | IPR013087 | - | |
Seca3g08150 | 268 | Gene3D | Classic Zinc Finger | 81 | 153 | - | - | |
Seca3g08150 | 268 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 130 | IPR036236 | - | |
Seca3g08150 | 268 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 105 | 125 | IPR013087 | - | |
Seca3g08150 | 268 | MobiDBLite | consensus disorder prediction | 34 | 49 | - | - | |
Seca3g08150 | 268 | FunFam | Zinc finger protein 2 | 81 | 149 | - | - | |
Seca3g08150 | 268 | MobiDBLite | consensus disorder prediction | 9 | 33 | - | - | |
Seca3g08150 | 268 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 1 | 268 | IPR044246 | GO:0009788 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g08150 | Seca-Chr3 | 208082175 | 208082981 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g08150 | 38 | 268 | C2H2 Transcription Factor Family | AT5G10970 | 42.798 | 4.23e-42 | 143 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca3g08150 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g08150 | - | - | gmx:102666245 | 322.783 |