Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08147 ATGGACAATAATGAGGAAATTCCATCAGCACCTGCAACACCAGGTACTCCTGGTGCACCTCTTTTTGGTGGGTTTAACTCTGAGAGAACTGGGAATGGTATTAGGAATGGTAGGAAAAAGTCCCTCCTCAAAAATTGTAAGTGCTTCAGTGTTGAAGAGTGGACCATAGAAGATGGAGCCTTACCCACTGTCTCTTGCTCATTGCCACCCCCTCCTATCCCTCTTGCAAGAAAGGTGGGGGCTGAGTTTATAGGGACATTTATTCTGATGTTTGCTGGGACAGCAACTGCTATTGTGAACCAAAAGACAGAAGGCTCTGAGACTCTGATTGGATGTGCTGCCTCTACTGGTCTTGCTGTTATGATTGTCATCCTCTCCACTGGCCACATCTCTGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCATGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCTGCTATATGTTCTGCATTTGCTCTGAAGGGGGTTTTTCACCCTTTCATGAGTGGTGGAGTCACTGTTCCTTCAGGAGGATATGGCCAAGCTTTTGCTTTGGAATTCATTATCAGCTTTAATCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAACTTGCGGGAATTGCAGTGGGAGCAACTGTCATGCTCAATATACTCATAGCAGGGTATGTCCCAACTCACCACTTACGGGTTACCCCGAAAAGAATCCAAAAAGAGAAGTTTACGAACTTGTTTAAATATTTACATGAATCATATTACTACTATTTATACACTGTATTTCTCACATGGTATAAGTATCTTTGTACTGCTCTTTTCTCACATGATATAAGCTAA 885 0.4395 MDNNEEIPSAPATPGTPGAPLFGGFNSERTGNGIRNGRKKSLLKNCKCFSVEEWTIEDGALPTVSCSLPPPPIPLARKVGAEFIGTFILMFAGTATAIVNQKTEGSETLIGCAASTGLAVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLAAICSAFALKGVFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGYVPTHHLRVTPKRIQKEKFTNLFKYLHESYYYYLYTVFLTWYKYLCTALFSHDIS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08147 294 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Seca3g08147 294 Pfam Major intrinsic protein 76 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08147 294 Gene3D Glycerol uptake facilitator protein. 72 246 IPR023271 -
Seca3g08147 294 SUPERFAMILY Aquaporin-like 74 241 IPR023271 -
Seca3g08147 294 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08147 294 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08147 294 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08147 294 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08147 294 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g08147 294 PANTHER AQUAPORIN NIP2-1 41 241 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08147 Seca-Chr3 208000870 208005701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08147 3 265 Major Intrinsic Protein MIP AT1G80760 72.000 1.77e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08147 K09874 - gmx:100815637 399.053