Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08145 ATGGTCAAACTCCTCTTAGAAAAAGGATACAGTGTCAGAGGAACCGTCAGAAACCCAGGCATGTCCAATGGGCATTTGAAAGAGTTGGAAGGAGCCTCTGAGAGGCTAACACTGCATAAGGTGGATCTCCTTGATCTTCAATCTGTTCAAGCAGCCATTCAAGGCTGTGACGGTGTCTTTCACACCGCTTCTCCCGTCACTGATAACCCCGGTCACGTGCAGGAAGAAATGGTGGAGCCAGCGGTGAATGGAGCCAAGAATGTGATCATAGCAGCTGCAGAAGCAAAAGTGCGACGCGTTGTCTTCACCTCATCAATTGGCGCAGTCTATATGGACCCCAGTAGGAGTGTCGATGTGGTGGTTGATGAGTCTTGTTGGAGTGATCTAGAGTATTGCAAGAACACCAAGAATTGGTACTGCTATGGGAAGGCTGTGGCTGAACAAGCAGCATGGGATACGGCAAAAGAGAAAGGGGTGGATTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGACCATTACTACAACCCACCATCAATGCTAGCACAATTCACATCCTTAAGTACCTTACTGGTTCTGCCAAGACATATGCAAATGCTACACAGGCTTATGTGCATGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGCCTTCTGCTTCTGGTAGATACATATGTGCCGAAAGTTCATTGCACCGTGGAGAACTAGTTGAAATTCTTGCCAAGCATTTCCCCGAATACCCAGTTCCTACCAAGTGTTCAGATGAAAAGAAGCCGAGAGTAAAACCCTACATCTTTTCAAACCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTTAGTCAGTGTTTGTATGAAACCGTTAAGAGCCTTCAGGAGAAAGGTCACCTTCCTGTTCCTAAGAAAGAAGACTCTGTTACAGTGAATTCCTAA 942 0.4586 MVKLLLEKGYSVRGTVRNPGMSNGHLKELEGASERLTLHKVDLLDLQSVQAAIQGCDGVFHTASPVTDNPGHVQEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPSRSVDVVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYICAESSLHRGELVEILAKHFPEYPVPTKCSDEKKPRVKPYIFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPKKEDSVTVNS. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08145 313 CDD FR_SDR_e 2 278 - -
Seca3g08145 313 Gene3D - 1 313 - -
Seca3g08145 313 FunFam Cinnamoyl-CoA reductase 1 1 312 - -
Seca3g08145 313 Pfam NAD dependent epimerase/dehydratase family 2 222 IPR001509 -
Seca3g08145 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 295 IPR036291 -
Seca3g08145 313 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08145 Seca-Chr3 207886217 207889832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08145 1 254 Monolignol Biosynthesis Gene Families AT1G80820 74.510 4.74e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08145 K09753 - gmx:100789070 548.51