Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08144 ATGGCTGTCACAGGCTCTGGTTCTGGGCAGCCACAATTCATTTCGAGCACTGGAAACCGAAGTCTCTCGAATGCACCGCTGATTGAGAACACAGATATTGATCAGATTGTTGTGCCTGATAGGACAAGCTGGAAAAATTTATTTGCTTACATGGGGCCTGGGTTTCTCGTTTCCATTGCATATATAGACCCAGGAAACTTCGAGACGGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTTGCATCTTGTGCTGCACTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAGCACTTAGCAGAGCATTGTAGAACTGAATATCCCCGAGTGCCCAACTTTATCCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAATATGCTCTTCAACATACCTGTTTGGATCGGTGTTCTTTTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAACAATATGGGGTAGTCTACAGTATTCTGTTCTATGGTTTTGATATCATAGAAAGAATTTTTGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGCATGTTTTATGGCTGAGCTTGGATATGCAAACCCTGATGCTAAAGAAGTTATGAAGGGTCTTTTTGTTCCAGAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCACTCCTTGGGGCTATGGTTATGCCGCACAATCTCTTCTTGCACTCAGCATTGGTGCTTTCAAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATTGAGAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATATTTGTGTTATTTCTGTAAGCGGTGCTGTGTGCAGTTCTTCAAATTTGAATGAAGAAGATCAGATGAGCTGTCAAGATTTGGATCTAAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGACAGTATGTCATGCAGGGGTTTCTTGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTAGCACTCATTGGTGGCTCTGCTGGTGCTGGAAAGCTCATAATAATTGCATCAATGATCCTATCATTTGAGCTACCTTTTGCTCTGGTTCCACTCCTCAAGTTCACAAGTAGCAAAACCAAGATGGGGCAACATGTTAACTCTATCACGATTTCAGCTATTACTTGGATAATTGGTTCCCTGATTATGGCCATCAATATATACTATTTAATAACTGGCTTCATCAAGCTGCTTCTCCGTAGTCATTTTGAAGTTGTGGCTAAGGTGTTTCTGGGGATATTAGGATTTTCAGGTATGGCAATATATTTGGCAGGTATAGCATATCTAGTACTCCGCAAAAATAAAGAGGCTACACACCTATTGGCTCTAACAGCACCAGAAAGTCAGCAAATGGAAAATGGACAAGGCAATGGATCAATCTATTGTCTTCCAAGAGAAGACATAGTAAGCATGCAATTACCTCAAAGAAGTTCTCCTGCAGATCTTGACTGA 1686 0.4116 MAVTGSGSGQPQFISSTGNRSLSNAPLIENTDIDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRTEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVVYSILFYGFDIIERIFVRKLEFLIAFLVFTIAACFMAELGYANPDAKEVMKGLFVPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINICVISVSGAVCSSSNLNEEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGQHVNSITISAITWIIGSLIMAINIYYLITGFIKLLLRSHFEVVAKVFLGILGFSGMAIYLAGIAYLVLRKNKEATHLLALTAPESQQMENGQGNGSIYCLPREDIVSMQLPQRSSPADLD. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08144 561 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 514 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 Pfam Natural resistance-associated macrophage protein 67 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 Pfam Natural resistance-associated macrophage protein 185 446 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PRINTS Natural resistance-associated macrophage protein signature 246 269 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PRINTS Natural resistance-associated macrophage protein signature 356 375 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PRINTS Natural resistance-associated macrophage protein signature 416 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 PRINTS Natural resistance-associated macrophage protein signature 384 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 Hamap Divalent metal cation transporter MntH [mntH]. 31 472 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g08144 561 NCBIfam Nramp family divalent metal transporter 52 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08144 Seca-Chr3 207876891 207883772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08144 15 554 Inorganic Solute Cotransporters AT1G15960 77.491 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08144 K21398 - gmx:100797298 967.222