Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08142 ATGGACAATCAACAACAACAATCCAAGAACTCCAAGAGGAACATTCTCTTCAACAAGTACGAAATAGGGAGGCTCCTTGGCCAGGGGAATTTCGCCAAGGTCTACCACGGAAGAAACATAATCACCAACGAAAGCGTTGCCATCAAGGTGATAAAGAAAGAGAAGATGAAAAAAGAGAGGCTTGACAGGCTCGTGAAGCAGATCAAGCGTGAGGTTTCAGTGATGAGACTCGTTCGTCACCCCCACATCGTTGAGCTAAAAGAAGTGATGGCCAATAAAGCTAAAATCTTTATGGTTGTTGAATACGTTAAAGGAGGAGAACTCTTCGCCAAGGTTGCAAAGGGGAAAATGAAAGAAGAAATTGCTAGAAAGTACTTTCAACAACTCATCAGCGCCGTTGATTTCTGTCACAGCCGTGGCGTAACTCACCGTGATTTGAAGCCAGAGAATCTCCTCTTAGACGAGAACGAAGACCTTAAAGTTTCTGACTTTGGCTTGTCGGCGTTGCCGGAACAGCGTAGATCCGACGGAATGCTACTAACGCCGTGTGGAACGCCGGCTTACGTGGCACCGGAGGTTTTGAAGAAGAAAGGGTATGATGGGTCTAAAGCTGATATATGGTCTTGTGGGGTTATCCTCTTTGCTCTGCTTTCTGGGTATCTTCCATTTCAAGGTGAGAATGTGATGAGGATTTATAGCAAGTCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCCCCTGAGGCTAAGAATTTGATCTCTAATTTGCTGGTTGTTGACCCTGAAAAGAGATACTCCATCCCTGATATAATGAAGGATCCTTGGTTTCAAATTGGGTTCAAGGAATCTGCTATGGAAGATAACATTAATTTCAATGAGGATGATGATGGGAATAGTAGTGGAAGTAATAATGATGATGCTGAGTTGGTTGGGGCGAAGCCAGCTCGTCCTTCTTACAATGCATTTGAGATCATTTCTTCGTTGTCGCATGGTTTTGATCTTAGGAACTTGTTTGAGACGAGGAAGAGGTCACCTTCGATGTTCATTTCGAAGTTTTCGGCTTCGGCGGTGCTGGGGAAGCTTGAGGCGGTGGCGAAGAAGCTGAATTTTAGGGTAACGGGGAAGAAAGAGTTCATGGTGAGAATGCAGGGGGCAGAGGAGGGAAGGAAGGGGAAGCTGGCTATGACGGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCTGTGGTGGAATTCTCTAAGTCTGCCGGAGACACACTTGAGTACATAAAATTCTGTGAGGATCAAGTCAGGCCTTCTCTCAAGGACATTGTTTGGAGCTGGCAAGGGGACAATAGTTGCCCTCAGTAG 1350 0.4578 MDNQQQQSKNSKRNILFNKYEIGRLLGQGNFAKVYHGRNIITNESVAIKVIKKEKMKKERLDRLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEEIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYALPEWISPEAKNLISNLLVVDPEKRYSIPDIMKDPWFQIGFKESAMEDNINFNEDDDGNSSGSNNDDAELVGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASAVLGKLEAVAKKLNFRVTGKKEFMVRMQGAEEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLKDIVWSWQGDNSCPQ. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08142 449 Gene3D Transferase(Phosphotransferase) domain 1 11 319 - -
Seca3g08142 449 MobiDBLite consensus disorder prediction 290 311 - -
Seca3g08142 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Seca3g08142 449 CDD CIPK_C 321 435 - -
Seca3g08142 449 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Seca3g08142 449 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08142 449 ProSiteProfiles NAF domain profile. 315 340 IPR018451 GO:0007165
Seca3g08142 449 SUPERFAMILY Protein kinase-like (PK-like) 16 278 IPR011009 -
Seca3g08142 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 435 - -
Seca3g08142 449 SMART serkin_6 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08142 449 Coils Coil 51 71 - -
Seca3g08142 449 Pfam NAF domain 319 374 IPR004041 GO:0007165
Seca3g08142 449 Pfam Protein kinase domain 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08142 449 FunFam Aurora kinase A 12 106 - -
Seca3g08142 449 FunFam Non-specific serine/threonine protein kinase 316 439 - -
Seca3g08142 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Seca3g08142 449 Gene3D Kinase associated domain 1, KA1 320 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08142 Seca-Chr3 207817317 207818690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08142 1 445 CBL-interacting serine-threonine protein kinases AT5G25110 60.532 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca3g08142 Pkinase 2.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08142 - - gmx:100804244 742.651