Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08139 ATGGATTATTCTTCATCATGGATTAACACTTCCCTGGATCTCAACATTAACCCCCACAGGGTTCATGATGAACTTCCCTGTTCATTTCAGAAAAAGGAGGTTGAAAACAATTTTTTCTCATTGGGATTGAAGCAGTCTTCTGTAAAAGAAGAGTCTGCTGGTGATTTGGTGGAGGAGCTTAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTCACTGAGATGTGTGAGAACTACAACACTTTGAGAAGCAACTTGATGGAATACATGAGGAAAAATCCTGAAAAGGAACTCAACTCATCAAAGAAAAGGAAGTCTGAGAGCAGTAACAACAATGGTAATCAAATGGGAGTTAATGGAAACTCTGAAAGCAGCTCAACTGATGAAGAATCATGCAAGAAACCAAGGGAAGAGACCATCAAGGCAAAAATTTCCAGAGTTTATTTCAGGACTGAAGCATCTGATACAAGCCTTATTGTGAAAGATGGATATCAGTGGAGGAAATATGGACAAAAAGTGACCAGAGATAACCCTTCTCCAAGAGCATACTTTAAATGCTCTTTTGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCAGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTAATCAAATGGAGGCAACTTCAGGCTCCAACCGTTCTATGACACTAGCTTCAGCACCTGGTTCAGGGTCTCTTAGTTCTTCTGCACCTATGGTTACCCTTGACTGGACAAAATCTAAGTCCAGCAATGAGTCTAAGAATATAAGTCCAAAAATCAATTCACCGGAAGTGCCTCAGAATTTGGTGGATCAGATGGCTAATTCCCTAACCAAGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCAATCTCAGGAAAAATGGTACACAAGAATTAA 942 0.4108 MDYSSSWINTSLDLNINPHRVHDELPCSFQKKEVENNFFSLGLKQSSVKEESAGDLVEELKRVSAENKKLTEMLTEMCENYNTLRSNLMEYMRKNPEKELNSSKKRKSESSNNNGNQMGVNGNSESSSTDEESCKKPREETIKAKISRVYFRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPNQMEATSGSNRSMTLASAPGSGSLSSSAPMVTLDWTKSKSSNESKNISPKINSPEVPQNLVDQMANSLTKDPNFRAALVAAISGKMVHKN. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08139 313 MobiDBLite consensus disorder prediction 223 279 - -
Seca3g08139 313 SMART WRKY_cls 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g08139 313 MobiDBLite consensus disorder prediction 96 139 - -
Seca3g08139 313 SUPERFAMILY WRKY DNA-binding domain 159 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g08139 313 MobiDBLite consensus disorder prediction 215 279 - -
Seca3g08139 313 FunFam WRKY transcription factor 40 147 224 - -
Seca3g08139 313 MobiDBLite consensus disorder prediction 107 128 - -
Seca3g08139 313 Coils Coil 53 80 - -
Seca3g08139 313 Gene3D WRKY domain 145 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g08139 313 ProSiteProfiles WRKY domain profile. 157 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g08139 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 309 IPR044810 GO:0003700
Seca3g08139 313 Pfam WRKY DNA -binding domain 163 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08139 Seca-Chr3 207607232 207609354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08139 1 313 WRKY Transcription Factor Family AT1G80840 53.517 1.55e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g08139 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08139 - - gmx:100798375 478.789