Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08136 ATGCGGCTTGCTCATGGATCTATTTATTCCAACAGATCCGTAGCTTATGTACCACAGGTCCCCTGGATTTTATCTGGAACAGTGCGTGACAATATATTATTTGGGAAAAGCTATGATCCTCAAAGGTATTCAGATACACTGCAGGCATGCGCATTAGATGTTGATATCTCACTGATGGTTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCACTCTATCATGGCTCAGATGTTATTATGCTTGATGATGTCCTGAGTGCAGTTGATGCACAAGTTGCTCAATGGATCCTACACAATGCCATTTTAGGTCCTCTTATGCAGGGAAAAACTCGATTGCTCTGTACCCACAACATTCAGGCAATGTCTTCTGCTGATATGATTATTGTATTGGACAAAGGACACATAAAGTGGATGGGAAATTCAGCTGAGTTTCTAATTTCTTCATATACAGGATTCTCCCCATTGAATGAAATTGATTCAACTTTAAATAGTCATGGACAATCTTGTAGCACCAATTCTTCTCCCAAATCAAAGGAGCAGTCTCTGATTATGCATGCTACCGAGGTTATAGAGGAGGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAGGTCGAAGTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATCACAGTTGTTATATGTCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAATAGACAGCAGTCAAACAAGATACTCTGTGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAACTAAGGTACACAATAGACTTCTTAGCAAGCTTATCGATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATATTGAATAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTAGGCCTGTTGGGTATTGCAATAATTTTGTCTTATGTACAGGTCTTCTTCTTAGTCCTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTTTACAGGTCAACATCTAGAGAATTACGAAGACTGGATAGTGTTTCACGTTCTCCAATATATACGTCTTTCACAGAAACACTTGATGGGTCAGCAACTATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTGCCAAATTCACTGAACATGTAACATTGTATCAGAAGACTTCTTATACAGAGATAGTGGCAAGTCTGTGGCTTTCCTTGCGTCTTCAATTATTAGCTGCATTTATCATCTCATTCATAGCCCTTATGGCTGTTGTCGGATCTCATGGCAGTCTGCCTATCAACTTCGGTACCCCAGGACTGGTTGGATTGGCCCTCTCTTATGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTGACAAGTTTTACTGAAACAGAGAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAGCTGGATGCCTATACTTAAATCCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAGCATGTTACTTTGAAATACATGCCATTTTTGCCAGCTGCACTCAGCAATCTTACTTTTAGAATTGCAGGAGGGACACAGATTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCAATCACAGTTGACGGCATGGACATTAAAAATATTCCTGTCAGAGAACTACGTACACACTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTCAAAATGCATGATGACTTCAAAATTTGGAATGCATTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTAAAGGAAGCGGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCACTTCTCAAATCTTCAAAGGTTCTCTGTTTGGATGAGTGTACGGCCAGTGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACAATATCTAGTGAATGCGAAGGAATGACAGTGATCACAATTGCTCACCGGATTTCAACTGTTATAAATATGGATAACATTCTGATTCTTGACCACGGGAAACTGGCTGAACAAGGAAATCCGCAGATTCTTCTGAAAGATGACACGTCTATATTTTCTAGTTTTGTTAAAGCTTCATCAATGTAA 2394 0.4035 MRLAHGSIYSNRSVAYVPQVPWILSGTVRDNILFGKSYDPQRYSDTLQACALDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARALYHGSDVIMLDDVLSAVDAQVAQWILHNAILGPLMQGKTRLLCTHNIQAMSSADMIIVLDKGHIKWMGNSAEFLISSYTGFSPLNEIDSTLNSHGQSCSTNSSPKSKEQSLIMHATEVIEEVIEVELRKEGKVEVGVYKNYAVFTGWFITVVICLSAILMQASRNGNDLWLSYWVDTTIDSSQTRYSVSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLIDAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSATIRAFKSEDFFFAKFTEHVTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLYLNPDWPNQGVIEFQHVTLKYMPFLPAALSNLTFRIAGGTQIGIIGRTGAGKSSVLNALFRLTPICTGSITVDGMDIKNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMHDDFKIWNALEKCHVKEEVEVAGGLDILVKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECEGMTVITIAHRISTVINMDNILILDHGKLAEQGNPQILLKDDTSIFSSFVKASSM. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08136 797 Pfam ABC transporter 11 99 IPR003439 GO:0005524
Seca3g08136 797 FunFam ATP-binding cassette (ABC) transporter, putative 547 794 - -
Seca3g08136 797 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 795 - -
Seca3g08136 797 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524|GO:0016887
Seca3g08136 797 Gene3D - 547 795 IPR027417 -
Seca3g08136 797 Pfam ABC transporter transmembrane region 239 487 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g08136 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 161 IPR027417 -
Seca3g08136 797 CDD ABC_6TM_MRP7_D2_like 237 537 - -
Seca3g08136 797 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Seca3g08136 797 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 238 525 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g08136 797 Pfam ABC transporter 577 724 IPR003439 GO:0005524
Seca3g08136 797 Gene3D - 1 180 IPR027417 -
Seca3g08136 797 SMART AAA_5 586 770 IPR003593 GO:0016887
Seca3g08136 797 SMART AAA_5 39 150 IPR003593 GO:0016887
Seca3g08136 797 Gene3D ABC transporter type 1, transmembrane domain 207 544 IPR036640 GO:0005524|GO:0016020
Seca3g08136 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 785 IPR027417 -
Seca3g08136 797 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 173 IPR003439 GO:0005524
Seca3g08136 797 FunFam ABC transporter C family member 5 202 543 - -
Seca3g08136 797 CDD ABCC_MRP_domain2 558 777 - -
Seca3g08136 797 ProSitePatterns ABC transporters family signature. 74 88 IPR017871 GO:0005524|GO:0016887
Seca3g08136 797 SUPERFAMILY ABC transporter transmembrane region 234 542 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08136 Seca-Chr3 207523955 207543207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08136 558 793 Calmodulin-binding Proteins AT2G36910 29.268 5.07e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08136 K05674 - gmx:100814181 1378.62