Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08124 ATGGCAGATCTCAAAGAGCGGCTACTTCCACCAAAACCTGCATCAGCTTTGAACGTAAGAGAGACTGCCAATAGACCATCTGCCTCTGGAAGGCAAAATTTTCAAGGAGTGGATGTTCTGGGACTGAAGAAGCGAGGTCAAGGTCTCCGATCATGGATTTGTGTTGACACATCTGGAAACTCTCAGGCCATTGAGGTAGACAAGTTTACTATGATGCGACGTTGTGATCTACCTGCACGCGATCTTCGCCTACTTGATCCTCTGTTTGTCTATCCATCAACAATCCTTGGTAGGGAAAAGGCAATTGTTGTAAATCTAGAGCAAATACGGTGTATAATTACAGCAGATGAGGTTCTTCTCTTGAATTCCCTTGATAGTTATGTATTGCATTATGTGATGGAGCTACAACGACGATTAACAACAACTGGGGGAGGTGAGGTCTGGCAATCAGACAATTCTGACATGAACCGAAGGAGAGGCAGTAGGAATTTTGAAAATGCATATAGCGACACTTCCCCTGATTATTTACCTTTTGAGTTCAGGGCTCTTGAAGTTGCCTTGGAGGCAGCATGCACATTTCTTGACTCCCAGGCAGCAGAGTTAGAAATTGAGGCATATCCGTTGCTGGATGAACTGACATCAAAGATCAGTACTCTAAATTTGGAACGTGTTCGTCGGTTGAAAAGTAGACTTGTTGCCCTTACTAGGAGAGTCCAGAAGGTTAGAGACGAAATAGAGCAGCTTATGGATGATGATGGTGATATGGCTGAAATGTATCTTACTGAGAAGAAAAGACGGATGGAGTTGTCATTTTATGGAGATCAGTCTATGACTGGATATAAATCAGTTGATGGTGCATCCATTTCAGCTCCAGTCTCTCCTGTTTCATCACCACCTGATTCTCGGAGGCTTGAAAAGAGCTTGAGCATTGCTAGGAGTCGACATGAAAGCATGAGGAGTTCTGAAAGTGCTACAGAAAGTATAGAAGAGCTTGAGATGTTGTTAGAAGCCTACTTCGTTGTCATTGACAGCACTCTAAACAAGTTGACTTCGGTAAACACACTGTTATCTACATTAACCATTTTCTTTCCAACTTTCCAGTTGAAAGAGTACATTGATGACACTGAAGATTTCATCAACATTCAACTGGATAATGTGCGTAATCAGCTTATTCAGTTTGAGCTTTTGCTCACAACTGCAACATTTGTCGTTGCCATATTTGGTGTGGTAGCAGGAATATTTGGGATGAATTTTGAAATTCCATTATTTGATGTCCCATCTGCATTCCAGTGGGTCCTTATAATAACAGGAGTTTGTGGAGTCTGCATATTTTCTGCATTTGTATGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAG 1380 0.4203 MADLKERLLPPKPASALNVRETANRPSASGRQNFQGVDVLGLKKRGQGLRSWICVDTSGNSQAIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLHYVMELQRRLTTTGGGEVWQSDNSDMNRRRGSRNFENAYSDTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMTGYKSVDGASISAPVSPVSSPPDSRRLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSVNTLLSTLTIFFPTFQLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFDVPSAFQWVLIITGVCGVCIFSAFVWFFKYRRLMPL. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08124 459 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 396 449 IPR045863 -
Seca3g08124 459 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 19 457 IPR039204 -
Seca3g08124 459 CDD Mrs2_Mfm1p-like 52 456 IPR039204 -
Seca3g08124 459 Gene3D Magnesium transport protein CorA, transmembrane region 126 390 - -
Seca3g08124 459 Gene3D Magnesium transport protein CorA, transmembrane region 397 457 - -
Seca3g08124 459 Coils Coil 224 251 - -
Seca3g08124 459 FunFam Magnesium transporter MRS2-1 397 457 - -
Seca3g08124 459 Gene3D - 39 123 - -
Seca3g08124 459 FunFam Magnesium transporter MRS2-1 40 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08124 Seca-Chr3 207416892 207422593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08124 1 459 MRS2 Gene Family AT1G16010 82.826 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08124 K16075 - gmx:100779803 766.533