Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08112 ATGGCCTATCTGCATCATCATTCTCCAGTCAAAGTCATACACTGTGATCTAAAACCAAGCAACGTACTTCTCAATGATGACATGACAGCTCTAGTTTCTGACTTTGGGATTGCAAGGCTATTTACCAGTGCCGGAGGAGGTAACGGTGGGGCTATTGATAACATGGGGAAATCTACTGCAAATTTGTTATGGGGATCCATTGGATATATTGCCCCAGAATATGGATTTGGATCAAATACATCTACCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTTACTAGAAAAAGACCAACAGATGACATGTTTGTTGGTGGGTTAAGTCTGCACAAATGGGTAAAGAGTCACTATCATGGAAGGGTAGAAAAAGTGGTAGACCCTGCTTTGGTGACAGCTTCAAGAGATCAATCACAAGAGGTTAAAAGGATGTGGGAAATTGCTATTGCGGAGTTAATTGAGTTGGGGATCCTTTGCACACAGGAGTCACCTTCAACTAGACCTACCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAAGTGGAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCACCATAGGTGGTGATTGA 630 0.427 MAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLFTSAGGGNGGAIDNMGKSTANLLWGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFVGGLSLHKWVKSHYHGRVEKVVDPALVTASRDQSQEVKRMWEIAIAELIELGILCTQESPSTRPTMLDAADDLDRLKRYLTGDTSGTFASSLGISSSTIGGD. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08112 209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Seca3g08112 209 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 181 - -
Seca3g08112 209 Pfam Protein kinase domain 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08112 209 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08112 209 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Seca3g08112 209 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 192 - -
Seca3g08112 209 SUPERFAMILY Protein kinase-like (PK-like) 1 180 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08112 Seca-Chr3 207200171 207201198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08112 1 180 Receptor kinase-like Gene Family AT3G47580 41.667 1.91e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca3g08112 Pkinase 8.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08112 - - pop:18094240 325.479