Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08111 ATGGTTTACTTACAAACATTGTTCTTTCTTCTGCTTTCAACATTTGGTCACTCCCTTCCAAGGCGCCAGTACCACCACAGCCCTTCTCATTCCTTACAAACAGATAAAGCCGCTCTTTTGGAATTCAAAAAGACAATCACATCAGACCCGCATTCCTCACTTGCTAACTGGGATGAAGCTGTTCATGTGTGCAACTTCACAGGTGTTGAATGCGACAAATTCCATCACCGTGTAACACACCTAATCCTTCATGATAATGCTCTAGTGGGGCTGCTTTCACCTGTTCTTTCCAATCTCACTGGACTGCATGTCCTTGAGATTGTTCACAATCTCTTACATGGCATTATTGCACCTGAATTTTCCTCCCTCAGACATGTCCACCGTATCATTCTTGAGGGGAATAACTTGCATGGTTCAATACCAGAGTCCTTTTCCCAGCTTTCCAAGCTTAACCTTCTAATTATTAAGGATAACAATATAACAGGTTCACTTCCTCCAACTCTCTTTTCCAATTGCACTCTACTAGAAATTGTGGACTTCTCTGGCAACTCCCTCACTGGTCAAATCCCAGAAGAGCTTGGAAACTGCCCAGGCCTATGGAGTATCAGTTTATACAACAATCAATTTACAGGACAGCTTCCTCTCTCTTTCACGAATCTATCAGTTGAAAATTTAGACGTGGAATACAATTACTTGTCTGGTGAATTGCCCACAAAGTTTTTAAGCAGCTGGCCATATCTGCTTTACCTTCATTTATCATACAACCATATGGTAAGTCATGATAACAACACCAATCTTGATCCATTTTTTACTGCTCTTAGAAACAACAATATTCTAGAGGAGCTTGAATTGGCAGGCATGGACCTTGGGGGATGTTTCTCCAATACTGTCGCCAGCCAACTTGGCACCAGTCTAAGAACTCTACTCCTGCAGGAAAACCAAATTTTTGGATCAATTCCTCACATCTTAGCAAATCTTTCAAGGCTTTTGATCCTGAATTTAACGTCCAATCTTCTAAATGGAACTATTCCCTCCGAGATCTGCAGATTACCAAACTTGGAACAACTTTTCTTATCACACAACCGTTTTAAAACTTCAATTCCAGAAGCAATAGGGAAGTGTGAACATTTGGGTCTTCTAGATCTGTCACACAACGAATTTTCTGGTAGGATTCCAGAAAGTTTGGGAAATTTGTTTCGACTGAATTATTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCTACATTGGGAAGGTGCATTAATCTGTACAAGCTTGATTTGTCCTATAATAGATTAACAGGAAACATCTCACTAGAACACTCAGGCTTGCGTGAGATCAGAATTTTCATCAATGTCTCTCATAATCATCTTGAAGGTCCATTGCCAATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATGGATCTTTCTTCAAATCACCTAACTGGAACTATCTTCCCTCAGATAGCAGGATGCATTGCTGTTTCCAGGATAAATTTTTCAAACAATTCTCTTCAAGGTAAGCTGCCACAATCCCTAGGTGATTTGAGGAACCTAGAATCCTTTGATGTTTCAAGAAATCAATTATCAGGATTGATACCAGCAACACTTGGTAAAATTGACACACTCACTTTTCTCAATTTATCATACAATAACCTGGAAGGAATGATTCCATCTGGTGGTATCTTTAATTCAGTATCAAATTTTTCGTTCTTGGGAAATCCACGACTTTGTGGGACAATTGCTGGTGTACCCTTGTGCTCTCAAAGGAGACGATGGTTTCACACTCGTTTGTTCTTGATTATATTCATTTTGGTCATTTTCATATCAACACTCTTGTCAACAATTTGCTGTGTAATTGCATGCAAGCGTGTTGAAGTAAGCATCTCCTCTCAGAGTACTGAGGCAAGAAATAAACCAGCTAGACCTGAGTTGATAAGTAACTTCCCAAGGATCACATATAAGGAACTATCAGATGCCACAGGAGGATTTGACAATCAGAGACTCGTTGGATCAGGTAGTTATGGGCGCGTCTACAAGGGAGTTCTTGCAAATGGGACACCAATAGCAGTTAAGGTGCTGCATGTGCAATCTGGAAATTCAACCAAGAGTTTTAACAGAGAATGCCAAGTTTTGAAGAGAATTAGGCATAGAAATCTGATAAGGATTATCACAGCATGTAGCTTACCAGATTTTAAGGGTCTTGTTCTACCTTATATGGCCAATGGTAGCTTGGAGAGCCGCTCTACCTTTTTTCTGGATCATCAGATTTGA 2283 0.4008 MVYLQTLFFLLLSTFGHSLPRRQYHHSPSHSLQTDKAALLEFKKTITSDPHSSLANWDEAVHVCNFTGVECDKFHHRVTHLILHDNALVGLLSPVLSNLTGLHVLEIVHNLLHGIIAPEFSSLRHVHRIILEGNNLHGSIPESFSQLSKLNLLIIKDNNITGSLPPTLFSNCTLLEIVDFSGNSLTGQIPEELGNCPGLWSISLYNNQFTGQLPLSFTNLSVENLDVEYNYLSGELPTKFLSSWPYLLYLHLSYNHMVSHDNNTNLDPFFTALRNNNILEELELAGMDLGGCFSNTVASQLGTSLRTLLLQENQIFGSIPHILANLSRLLILNLTSNLLNGTIPSEICRLPNLEQLFLSHNRFKTSIPEAIGKCEHLGLLDLSHNEFSGRIPESLGNLFRLNYLFLNNNLLSGTIPPTLGRCINLYKLDLSYNRLTGNISLEHSGLREIRIFINVSHNHLEGPLPIELSKLEKVQEMDLSSNHLTGTIFPQIAGCIAVSRINFSNNSLQGKLPQSLGDLRNLESFDVSRNQLSGLIPATLGKIDTLTFLNLSYNNLEGMIPSGGIFNSVSNFSFLGNPRLCGTIAGVPLCSQRRRWFHTRLFLIIFILVIFISTLLSTICCVIACKRVEVSISSQSTEARNKPARPELISNFPRITYKELSDATGGFDNQRLVGSGSYGRVYKGVLANGTPIAVKVLHVQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKGLVLPYMANGSLESRSTFFLDHQI. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08111 760 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 648 742 - -
Seca3g08111 760 ProSiteProfiles Protein kinase domain profile. 667 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08111 760 SUPERFAMILY Protein kinase-like (PK-like) 643 750 IPR011009 -
Seca3g08111 760 Gene3D Ribonuclease Inhibitor 31 169 IPR032675 -
Seca3g08111 760 FunFam LRR receptor-like serine/threonine-protein kinase EFR 301 595 - -
Seca3g08111 760 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Seca3g08111 760 PANTHER OS04G0122200 PROTEIN 341 751 - -
Seca3g08111 760 Gene3D Ribonuclease Inhibitor 263 596 IPR032675 -
Seca3g08111 760 SMART LRR_typ_2 350 374 IPR003591 -
Seca3g08111 760 SMART LRR_typ_2 398 422 IPR003591 -
Seca3g08111 760 SMART LRR_typ_2 147 171 IPR003591 -
Seca3g08111 760 SMART LRR_typ_2 519 542 IPR003591 -
Seca3g08111 760 SUPERFAMILY L domain-like 299 582 - -
Seca3g08111 760 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515
Seca3g08111 760 SUPERFAMILY L domain-like 33 288 - -
Seca3g08111 760 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Seca3g08111 760 Pfam Protein kinase domain 668 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08111 760 FunFam Leucine-rich repeat receptor-like protein kinase 32 191 - -
Seca3g08111 760 Gene3D Ribonuclease Inhibitor 170 262 IPR032675 -
Seca3g08111 760 Gene3D Phosphorylase Kinase; domain 1 648 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08111 Seca-Chr3 207197844 207200126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08111 33 749 Receptor kinase-like Gene Family AT3G47570 32.570 1.98e-108 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca3g08111 Pkinase 8.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08111 - - gmx:100815766 1167.91