Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08107 ATGCTTTCGTTGCTTTTGCGTCATAATCGTTCGTTGTGCTTTCGCTGTGCTCCATCGCCCATTGTGAAGAAACTCCCTCGCCATTTTTTAAGATGGAAAGGGGTGTACACCACTAGCAGCGGAAGTAGTGGAGTTGGTCTAACCACTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTGGAAGGGGGAACATTGGCTTTTTTAACTGTTTTTTTCTTTTATTCTTCTGTAAACTGGATTACAGATTCAAAAAGGTTCCAGTATACAGGACAAACATTGGTTGGCAAGAATCATTTGAAATTCTGGAGCAATTATCCTCCCTTGCTTTGGATGGCTAATATTTCTGTAGGCTGCAATTTCAACTTGAAGAAATTTCTTTTCCGCACTTATGATGAAGATTTTGAGAAGGTTGTTGGAATCAGAACCATAGAGATAATGCCTACTTTCAATAAAGACTTGGATTCCGCATTCCAAACTGCAGGAGCAAACTCGCAGTTTTTGCAAAAAATGGCCCTCCTCATTATGACATACAATATTGGCTGGGAAATGACACAAAGAAGGATAAGGTTGTCATATTTACTTTTAATACGTGCAGAATTTGGTAATTGA 615 0.3935 MLSLLLRHNRSLCFRCAPSPIVKKLPRHFLRWKGVYTTSSGSSGVGLTTAVQKDPVTNEMVLEGGTLAFLTVFFFYSSVNWITDSKRFQYTGQTLVGKNHLKFWSNYPPLLWMANISVGCNFNLKKFLFRTYDEDFEKVVGIRTIEIMPTFNKDLDSAFQTAGANSQFLQKMALLIMTYNIGWEMTQRRIRLSYLLLIRAEFGN. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08107 204 Gene3D - 5 70 IPR027417 -
Seca3g08107 204 ProSiteProfiles MCM family domain profile. 33 69 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca3g08107 204 Pfam MCM P-loop domain 33 67 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08107 Seca-Chr3 207056186 207059342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08107 6 69 Core DNA Replication Machinery Family AT4G02060 48.485 8.92e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08107 K02210 K08472 gmx:100805442 95.1301