Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08095 ATGACTAACCTCTCTCACAAAACCCTCAACACCACCACCACCACCACACCCACCACCATGGTCAAGCGCTCACGCAAAAGCACCCCAAGAGACACACCTTCACAACGAAGAAGCTCAATCTACAGGGGTGTTACAAGGCATAGATGGACGGGTCGATATGAGGCACATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAACAAGAAAGGAAGACAAGTGTTATTAGGGGCATATGATGATGAAGATGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAACTTTCCATTATCAAATTATCAAGACGAGCTTAAGGAGATGGAGGATCAATCAAAAGAGGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGGTTCTCTAGAGGAGTCTCAAAATACAGAGGTGTGGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAACAAATATCTATACCTGGGAACTTACGCTACACAAGAAGAAGCGGCAACGGCATATGATATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACGCCCTAAAACCCAAGACCAAGACAACCACAACGAAATCCCAAATAACAACCCTCAACCAAATAATCCCAATTTGTCTGAAGAACTCGAATTAGGGTTTGTTTCCAACCAACTCAGCCCAAGCGAACCACGATCTGATGGTAATGGCACTACTACTACTACAACATCATCTTCTGCATTGGGGCTTCTTTTACAATCATCAAAATTCAAGGAAATGCTAGAAAGGACTACTTCTTCAGCTGCGGATTACCCTTCACCACCTTCAAAGTCAAACACTCCTCGTCGTAGTACATTTCCTGAAGATGTTCAAACATTTTTTGAAAGCCATGATCATGATGCTGCTTCTGGAAGTGGAAGCTACACCGAGAGTGATGACGTCATATTTGGGGAGTTGAGCTCAATTGCTGCACCAATTTTTTCATTGTGA 1050 0.4381 MTNLSHKTLNTTTTTTPTTMVKRSRKSTPRDTPSQRRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVLLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPKTQDQDNHNEIPNNNPQPNNPNLSEELELGFVSNQLSPSEPRSDGNGTTTTTTSSSALGLLLQSSKFKEMLERTTSSAADYPSPPSKSNTPRRSTFPEDVQTFFESHDHDAASGSGSYTESDDVIFGELSSIAAPIFSL. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08095 349 FunFam AP2-like ethylene-responsive transcription factor 141 202 - -
Seca3g08095 349 Gene3D AP2/ERF domain 40 108 IPR036955 GO:0003700|GO:0006355
Seca3g08095 349 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Seca3g08095 349 ProSiteProfiles AP2/ERF domain profile. 40 106 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 MobiDBLite consensus disorder prediction 213 266 - -
Seca3g08095 349 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 261 - -
Seca3g08095 349 SUPERFAMILY DNA-binding domain 141 202 IPR016177 GO:0003677
Seca3g08095 349 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 MobiDBLite consensus disorder prediction 281 305 - -
Seca3g08095 349 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 CDD AP2 141 202 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 SMART rav1_2 40 112 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 FunFam AP2-like ethylene-responsive transcription factor 39 108 - -
Seca3g08095 349 MobiDBLite consensus disorder prediction 217 266 - -
Seca3g08095 349 Pfam AP2 domain 141 192 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 Pfam AP2 domain 40 98 IPR001471 GO:0003700|GO:0006355
Seca3g08095 349 SUPERFAMILY DNA-binding domain 39 108 IPR016177 GO:0003677
Seca3g08095 349 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g08095 349 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08095 Seca-Chr3 206428883 206435945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08095 36 204 AP2-EREBP Transcription Factor Family AT5G57390 73.373 7.84e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca3g08095 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08095 K09285 - jre:109011037 447.203