Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08094 ATGCCATGCTTCTTCTTCTTCTTAATAGAACCTGCAAGTAATTTTGAAAACAACCAAGTTCAAATCATGATGAATGGTTCCCAAAAATCCTCAACTCCATACACCTCTCTGTATTCCAATCCCCTCAATAACGTCAATGAGCTCAGGCACTGTCGTAGTTGCAGCACCGATTATGGCCAATTACGCTTAGCTTCCACCAAAGGTGACACCTTTCACTTTGAAGATTTCAGGAATGACCATGACAACAAAGAAAACGCAAATGGGCCATCTTCTTCTCTGCCTAAACCCTTCTCAAAGTCCAAGTCTTTGTCCACAGACAGGGTTCTTAAGCCCACCTCACTCCAGTTCTGTATGCAAATGAATGACCCTCTTGATTCTCAACGTTCCTCCTCTTTGAATATTTGGGACTACTCTGACTCTGATGCTGCTCCTGCTTCTTCCTGGTCCACTCTGCCCAATAAGTCTTTGATATGTAGACCCTTGCCTATTGATATTGGAAGGTGTACTTGTGTTATTGTGAAGGAAGCAATGCCACAGGGACTATCTGGGGGCAGTTTATTCTCTCTTTACACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCAACACAAGCGGCGGAATGGGAGGTCTCAATTCATTGTAGCTCAGAATGTAAAAGGACTACTGTCCAATTCAGATGATAGTTTCCTTGGGACCGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGGACATCGTCATGATTCTCATAGTAAACAACCAAAGCCACCTCTAGCTGTTGTGAAGTATATACCTACAGTAGCAACATGTACAGGAAGTCACAGAAGCATTAAGGCATACATACCCAAGCATCAATCTATGTCACTCAAGAACACAGCCCAGGTACAGCATATTAAAGGATTGCCAATGAATTGGGAGGGAAAATTAGACAAAGTCCATCAACTATACTCAAGGATTCCACTGTACAACAAGATTTCAAAGCAATTTGAGCTTGACTACAGAGATAAAGGAAGGACAGGACTTAGAGTCCAAAGATCAGTGAAAAATTTTCAACTGACTTTAGAGGAGAATGGGAAGCAGACCATCCTACAGCTAGGGAGGGTTGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGCTGCACCGTATAG 1233 0.4274 MPCFFFFLIEPASNFENNQVQIMMNGSQKSSTPYTSLYSNPLNNVNELRHCRSCSTDYGQLRLASTKGDTFHFEDFRNDHDNKENANGPSSSLPKPFSKSKSLSTDRVLKPTSLQFCMQMNDPLDSQRSSSLNIWDYSDSDAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEAMPQGLSGGSLFSLYTYEGQGRQNRKLAVAQHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGHRHDSHSKQPKPPLAVVKYIPTVATCTGSHRSIKAYIPKHQSMSLKNTAQVQHIKGLPMNWEGKLDKVHQLYSRIPLYNKISKQFELDYRDKGRTGLRVQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08094 410 Pfam Tub family 159 403 IPR000007 -
Seca3g08094 410 SUPERFAMILY Tubby C-terminal domain-like 145 409 IPR025659 -
Seca3g08094 410 PANTHER TUBBY-RELATED 26 407 - -
Seca3g08094 410 MobiDBLite consensus disorder prediction 85 104 - -
Seca3g08094 410 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Seca3g08094 410 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Seca3g08094 410 PRINTS Tubby superfamily signature 233 257 IPR000007 -
Seca3g08094 410 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Seca3g08094 410 Gene3D Tubby Protein; Chain A 153 403 IPR025659 -
Seca3g08094 410 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08094 Seca-Chr3 206421159 206424334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08094 91 303 TUB Transcription Factor Family AT1G16070 54.825 9.63e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca3g08094 Tub 3.5e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08094 K19600 - rcu:8280277 507.679