Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08091 ATGGATCAAGTTTCTCTCAACAGTGAGCCAGTAGCAGATGGCGATGGTGATGGTGATGGTGATGGATTTGAGTGTGAAAGTGAATTGGTCAATAATCAAAGTGGGAACATTGAAGGAAATAACCCTATTCCTCCTGCGGTTGGAATGGAATTTGAGACCTATGAGGATGTATATTACTTCTATAATTGCTATGCTAAGGAACAGGGTTTTGGGGTTAGAGTAACAAATACTTGGTACAGGAAGAGTAAAGAACGTTATAGAGCAAAACTTAGTTGCAGCAGTGCAGGCTTCAAGAAAAGAAGTGAAGCGAATCGCCCTAGACCCGAAACTAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGACTCCAAAAGGTGGAGGATTATAGAAGTTGAGCTTGACCACAATCACTTGATTAACCCAACCAGTGGAAAGTTTTATAAGTCTCATAAGCATATTGCTCTTGGGACCAAAAGAGCATTGCAATTAGATGCTGCTGCTGCTGAACAGGTTCAGAAAATTAGGATGTTTCGCACTGTGATAGTTGATGCTGAGCCTAATGCAAGTATGGATGTTGATCAAGGGAAGTCCAAAATGAATCTTCACTCTAATCAATTGAAGCTAAAGAAAGGTGATGCTGAAGCAATTCTGAATTTTTTTAGTCGCTTGCAATTGGCAGATCCGGAATTCTTCTATGTTGCAGATATCAATGAGAGGGGATGCTTGAGGAATTTGTTCTGGGCTGATGCAAAGTCCAGAGTAGATTACAATTATTTCAATGATGTGGTTATGATTGATACTACATGTTTGACAGGTGAATATCAAGTTCCCCTGGTTTTGTTCCTTGGATCAAACTACCATAAACAATCCATTTTGTTTGGTTGTGGATTGCTTGCTGGTGAAACCATTGAATCATATACATGGCTGTTTAGGGCATGGCTTACATGTATCTTAGGACGCCCCCCACAGGTTATCATTACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTTTTTCCTAGAGCTACACACTGTCTTTGCTTATTTAATATCATGCAAAAAATTCCAGAAATGCTAGGAGCATCTCTAGAATGTGAAGCAATAAGTGCAGCTTTGAACAGAGCAGTTTATTCTTCTCTGAGGGCTGAGGAATTTGAAGCAACATGGGAGGACATGATGAAAAGCAATGAAATTACAGGCCATAAATGGCTTCAATCATTATATGAGGATCGGAAACGGTGGGTTCCAGTTTATCTAAAGGAATTTTTCTTGGCAGGAATGTTTCCAATCCAACCAAGTGATGTTGTATCATTTTTCTTTGATGACTACCTTAATGAACAAACTTCTCTAAAAGAATTTTTAGAAAAATATGATCAGGCTTTACAGACAAAACGACAACTTGAGGCTATGGCAGATTTGGACTCAAAATCTTCTAGCTTTATGCCAAAATCAAGGTCTTACTTTGAGTTGCAGGTGTCAAAGTTATACACCAATGAAATATTAAGAATGTTTGAAAGGGAAGTGGAAGGAATGTTTTCTTGCTTTAGCACCAGACAGATAAATGTTGATGGACCAGTCATCACATACATTGTTCAGGAACAATTTGAGGTTGAGGGAAATCAGAGAGATGCTAGGGAATATGAAGTGTATTACAATGGAGCTGAGGTGGAGGTCTTCTGCATTTGTGGTTTGTTCAATTTCAGAGGCTACTTGTGTAGGCATGCTTTATTTATCTTAAGCCAAAATGGCATAAATGAGATCCCACCTCAGTACATTCTTTCACGATGGAGAAAAGATATGAAGCGTACCAATGTTTATGATCACAACTGCAGTGGCATTGATATTAATAACCCTGTTCATAGGTATGACCATTTATACAGACAGATTGTGAAGGTTGTGGAGGAAGGTAGGAAATCCCATGACCATTACAAGACTGCAGTACAAGCATTGGAAGATGTATTGAACAAACTCCATCTTGTAAATGTAGATGATCTTCCAATATAG 2016 0.3899 MDQVSLNSEPVADGDGDGDGDGFECESELVNNQSGNIEGNNPIPPAVGMEFETYEDVYYFYNCYAKEQGFGVRVTNTWYRKSKERYRAKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDSKRWRIIEVELDHNHLINPTSGKFYKSHKHIALGTKRALQLDAAAAEQVQKIRMFRTVIVDAEPNASMDVDQGKSKMNLHSNQLKLKKGDAEAILNFFSRLQLADPEFFYVADINERGCLRNLFWADAKSRVDYNYFNDVVMIDTTCLTGEYQVPLVLFLGSNYHKQSILFGCGLLAGETIESYTWLFRAWLTCILGRPPQVIITNQCGILQTVVADVFPRATHCLCLFNIMQKIPEMLGASLECEAISAALNRAVYSSLRAEEFEATWEDMMKSNEITGHKWLQSLYEDRKRWVPVYLKEFFLAGMFPIQPSDVVSFFFDDYLNEQTSLKEFLEKYDQALQTKRQLEAMADLDSKSSSFMPKSRSYFELQVSKLYTNEILRMFEREVEGMFSCFSTRQINVDGPVITYIVQEQFEVEGNQRDAREYEVYYNGAEVEVFCICGLFNFRGYLCRHALFILSQNGINEIPPQYILSRWRKDMKRTNVYDHNCSGIDINNPVHRYDHLYRQIVKVVEEGRKSHDHYKTAVQALEDVLNKLHLVNVDDLPI. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08091 671 SMART 26again6 562 589 IPR006564 GO:0008270
Seca3g08091 671 Pfam SWIM zinc finger 551 584 IPR007527 GO:0008270
Seca3g08091 671 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 662 IPR031052 GO:0006355
Seca3g08091 671 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g08091 671 Coils Coil 454 474 - -
Seca3g08091 671 Pfam MULE transposase domain 264 358 IPR018289 -
Seca3g08091 671 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Seca3g08091 671 Pfam FAR1 DNA-binding domain 60 142 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08091 Seca-Chr3 206387559 206390038 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g08091 MULE 2.6e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08091 - K17604 gmx:100796267 1074.69