LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g08089	ATGAAGCTCACTGTGAAGACTTTGAAGGGAAGCCATTTCGAAATCAGGGTTCAGCCCTCCGATTCTATAATGGCAGTGAAAAAAAACATTGAAGACGTCCAGGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGATAATAAGGTTTCTGAAGATGGATTTCTTGTTGTCATGCTTAGTAAGGATTGCAGGGGTTTGAGGGTGGATAGCATAACTGAACCAATCGGATTGTTAGGTGGGTACAAAAAACTTGTCTTTGGAGAGTTAAACATATTATGCTCATCCAAGGAGCTGAAGCAAGAACATCGTATCTTGTCATCACCAACTGATGGGGAGCGAGCAAAACCTTGGGATCTGCAGGAACTTCCTCAACTCAGGCATCCTGCTAGCAATCCACCTACAACTGCATCAACACCAAGCTCTACACCTCCTGTACAAACTCAGTCTGCAAACAACGTTGCATCTGCAACAGATGTTGCGACTACAAATGTGACTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAACAGACTATTCAACAACTTATGGACATGGGTGGTGGAAGCTGGGACAGAGATACAGTTAGTCGTGCTCTGCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTACTCTGGAATTCCCGAGGCAGCAGAAGTTGTTGTACCAGCTGCTCATTACTCAAGTAGTCAGGCAACTGGAACAGGGGGGGTCAGTGCCGGAGCTGTTCCTGGGGCCCCTAACTCATCTCCCTTGAACATGTTTCCGCAGGAGACAATTTCTGGTGCTGGAGCTGGAATTGGATCTCTTGACTTCCTTAGGAACAATCCCCAGGTGGACCTTTTTTTTCCATCAAATGCTGTGTTCTCAATGTTATGA	954	0.4497	MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKDCRGLRVDSITEPIGLLGGYKKLVFGELNILCSSKELKQEHRILSSPTDGERAKPWDLQELPQLRHPASNPPTTASTPSSTPPVQTQSANNVASATDVATTNVTADTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEVVVPAAHYSSSQATGTGGVSAGAVPGAPNSSPLNMFPQETISGAGAGIGSLDFLRNNPQVDLFFPSNAVFSML.	318

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g08089	317	FunFam	UV excision repair protein RAD23 homolog	190	240	-	-
	Seca3g08089	317	FunFam	UV excision repair protein RAD23	1	79	-	-
	Seca3g08089	317	Pfam	UBA/TS-N domain	197	235	IPR015940	-
	Seca3g08089	317	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-
	Seca3g08089	317	Gene3D	-	190	240	-	-
	Seca3g08089	317	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	303	-	-
	Seca3g08089	317	MobiDBLite	consensus disorder prediction	139	169	-	-
	Seca3g08089	317	MobiDBLite	consensus disorder prediction	142	169	-	-
	Seca3g08089	317	Pfam	Ubiquitin family	3	76	IPR000626	GO:0005515
	Seca3g08089	317	SMART	uba_6	197	237	IPR015940	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g08089	Seca-Chr3	206359712	206365015	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g08089	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	40.541	4.42e-07	47.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g08089	K10839		-	cit:102620700	313.923

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