Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08089 ATGAAGCTCACTGTGAAGACTTTGAAGGGAAGCCATTTCGAAATCAGGGTTCAGCCCTCCGATTCTATAATGGCAGTGAAAAAAAACATTGAAGACGTCCAGGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGATAATAAGGTTTCTGAAGATGGATTTCTTGTTGTCATGCTTAGTAAGGATTGCAGGGGTTTGAGGGTGGATAGCATAACTGAACCAATCGGATTGTTAGGTGGGTACAAAAAACTTGTCTTTGGAGAGTTAAACATATTATGCTCATCCAAGGAGCTGAAGCAAGAACATCGTATCTTGTCATCACCAACTGATGGGGAGCGAGCAAAACCTTGGGATCTGCAGGAACTTCCTCAACTCAGGCATCCTGCTAGCAATCCACCTACAACTGCATCAACACCAAGCTCTACACCTCCTGTACAAACTCAGTCTGCAAACAACGTTGCATCTGCAACAGATGTTGCGACTACAAATGTGACTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAACAGACTATTCAACAACTTATGGACATGGGTGGTGGAAGCTGGGACAGAGATACAGTTAGTCGTGCTCTGCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTACTCTGGAATTCCCGAGGCAGCAGAAGTTGTTGTACCAGCTGCTCATTACTCAAGTAGTCAGGCAACTGGAACAGGGGGGGTCAGTGCCGGAGCTGTTCCTGGGGCCCCTAACTCATCTCCCTTGAACATGTTTCCGCAGGAGACAATTTCTGGTGCTGGAGCTGGAATTGGATCTCTTGACTTCCTTAGGAACAATCCCCAGGTGGACCTTTTTTTTCCATCAAATGCTGTGTTCTCAATGTTATGA 954 0.4497 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKDCRGLRVDSITEPIGLLGGYKKLVFGELNILCSSKELKQEHRILSSPTDGERAKPWDLQELPQLRHPASNPPTTASTPSSTPPVQTQSANNVASATDVATTNVTADTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEVVVPAAHYSSSQATGTGGVSAGAVPGAPNSSPLNMFPQETISGAGAGIGSLDFLRNNPQVDLFFPSNAVFSML. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08089 317 FunFam UV excision repair protein RAD23 homolog 190 240 - -
Seca3g08089 317 FunFam UV excision repair protein RAD23 1 79 - -
Seca3g08089 317 Pfam UBA/TS-N domain 197 235 IPR015940 -
Seca3g08089 317 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Seca3g08089 317 Gene3D - 190 240 - -
Seca3g08089 317 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 303 - -
Seca3g08089 317 MobiDBLite consensus disorder prediction 139 169 - -
Seca3g08089 317 MobiDBLite consensus disorder prediction 142 169 - -
Seca3g08089 317 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Seca3g08089 317 SMART uba_6 197 237 IPR015940 -
Seca3g08089 317 Gene3D - 1 77 - -
Seca3g08089 317 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Seca3g08089 317 SMART ubq_7 1 75 IPR000626 GO:0005515
Seca3g08089 317 SUPERFAMILY UBA-like 194 245 IPR009060 GO:0005515
Seca3g08089 317 NCBIfam UV excision repair protein Rad23 1 304 IPR004806 GO:0006289
Seca3g08089 317 CDD Ubl_Rad23 1 74 - -
Seca3g08089 317 CDD UBA1_Rad23_plant 191 240 - -
Seca3g08089 317 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 195 238 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08089 Seca-Chr3 206359712 206365015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08089 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 4.42e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08089 K10839 - cit:102620700 313.923