Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08084 ATGCATACTTTGATGGATTCAAAAAGTGCAGTGTTGGTGGTGATCTTTGTTTGGATTTCAGTGTGTTCCCATGGTGCTGTTATCGTATCAAAGGATGGAAGTGGAGATTACACAAGTGTGGGTGAAGCTATTAACAAAGCACCGGATTTGAGTGACAAACCTTACACCATTCGCATTAGAGCAGGTACTTATGAAGAATATGTCCTCATTCCCGCTGAGAAGACTAATATTAACCTCATTGGAGATGATCCTCGCCACACAAAAATAGTTGGTTATCAAAAAGGTTCCACCATAGACATTCGTGGAGAAGGATTCATGGCCAAAAACATAGGATTCATGAACTCAGCAGTGCTAAACGCAAGCGCAGCAGTGGCGGTTCGCAACGAGGCAAACAAGAGCATCTTCTTCCAATGCATCATTGAAGGCTTCCAAGACACATTATGGGCTGTTTCGGGCCTTCAATTCTACAAAAACTGTGACATATACGGCACCGTTGATTTCATCTACGGCAACGCAGCAGCAGTTTTCCAAGACTGTAACATCTACGCGCGGTATCGAGAGTACGTGACTTTCACTGCTCAGTCACGTGAGGGTGCACATGAGAACACAGGGTTTACATTCCAAAGGTGCAAGTTCACAATGTCCCCTGAGGATTCGGATAGAAAATCAGAGGTTCATGCTACATTGGGGCGTCCCTGGAGGGCTTATTCAAGAGTGGCTATATTACAGTGTTACATTGATTCTATAGTGGATCCTCATGGTTGGGAACACATGCCTCACCAACCCACTGATAAGGTTACCTATGTGGAGTTTAAGAATTTTGGGCCTGGATCTAAAACTGATGGGAGGGTTAATTGGCCTGGTGTTAGACTCCTTCGTTACCCAATTCAAGCAGTGCCTTTTACTGCTTCTCGTCTTTTGGATGCTGATTCTTGGATTCCCTCCAGGGGTGTTCCGTATGATAATGGACTCTAG 975 0.4472 MHTLMDSKSAVLVVIFVWISVCSHGAVIVSKDGSGDYTSVGEAINKAPDLSDKPYTIRIRAGTYEEYVLIPAEKTNINLIGDDPRHTKIVGYQKGSTIDIRGEGFMAKNIGFMNSAVLNASAAVAVRNEANKSIFFQCIIEGFQDTLWAVSGLQFYKNCDIYGTVDFIYGNAAAVFQDCNIYARYREYVTFTAQSREGAHENTGFTFQRCKFTMSPEDSDRKSEVHATLGRPWRAYSRVAILQCYIDSIVDPHGWEHMPHQPTDKVTYVEFKNFGPGSKTDGRVNWPGVRLLRYPIQAVPFTASRLLDADSWIPSRGVPYDNGL. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08084 324 SUPERFAMILY Pectin lyase-like 21 322 IPR011050 -
Seca3g08084 324 Gene3D - 23 324 IPR012334 -
Seca3g08084 324 FunFam Pectinesterase 24 320 - -
Seca3g08084 324 PANTHER PECTINESTERASE 26 314 - -
Seca3g08084 324 Pfam Pectinesterase 27 309 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08084 Seca-Chr3 206193858 206196885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08084 26 324 Carbohydrate Esterase AT2G26440 39.744 7.26e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08084 K01051 - gmx:102665195 477.248