Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08082 ATGGGTTCTGTGTCTGGAGAGGAGAAGATGGACCTCGATTTTGATGAGGAGATTCCCTTAAGCGCCACATCATCTGCCTCTAAAGTACATCCTTTCAGTTTCGAGCCAAGAGTTGCTTTGCCCAAATCATCCATCTTAAACCTCTTAAGGACAAGACGAATCAGCAGGAGTATATATGTTGTATTAATTAAAGCCAAGATCAACGCCTTGCTACCTTTTGGTCCATTGGCCATATTGCTACATTACCTAACGGGAAAACATGGATGGGTGTTCTTCTTCACATTATTAGGTATTACTCCTTTGGCAGAACGTCTGGGTTATGCTACTGAGCAGCTTGCGTTCTACACAGGACCGACAGTTGGGGGTCTACTCAATGCCACGTTTGGAAATGCTACTGAAATGATTATATCAATTTATGCATTAAAAAGCGATATGATTAGGGTTGTTCAACAGTCTTTACTTGGCTCAATATTATCAAATATGCTTCTAGTTCTTGGGTGTGCATTCTTTACTGGTGGGATTGTCCACCACCAAAAAATTCAGGTTTTCAATAAGGCAGCTGCTGTTGTCAATTCTGGGTTGCTGTTGATGGCTGTAATGGGAATATTATTTCCTGCTGTTCTTCACTTTACTCATTCAGAGGTTCATCTTGGGAAGTCAGTGTTATCTCTATCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCAAAATTCTTATAGTCCAGTTAATGAGGAAGGAGATACAAGTGAAAATTCTGACGAGGAGGAAGAAATTGAATTAACCCAATGGGAAGCGATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCTGTGAAGGACAAGCTTGTAAGTGGCTTTCAAAGTCCACTCTTTATTCTGTGGATGCTGTTTAACTTGTTAATGGGTTCAATTTCTCCACAGGATATCACAATTGGAGTTGCTGTTGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTATTCTGTGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAA 1368 0.4028 MGSVSGEEKMDLDFDEEIPLSATSSASKVHPFSFEPRVALPKSSILNLLRTRRISRSIYVVLIKAKINALLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHQKIQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAYASYLFFQLKSQQNSYSPVNEEGDTSENSDEEEEIELTQWEAIIWLAILTAWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLVSGFQSPLFILWMLFNLLMGSISPQDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08082 455 NCBIfam calcium/proton exchanger 70 339 IPR004798 GO:0006816|GO:0015369
Seca3g08082 455 Pfam Sodium/calcium exchanger protein 278 442 IPR004837 GO:0016020|GO:0055085
Seca3g08082 455 Pfam Sodium/calcium exchanger protein 89 244 IPR004837 GO:0016020|GO:0055085
Seca3g08082 455 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 50 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca3g08082 455 Gene3D - 118 256 IPR044880 -
Seca3g08082 455 Gene3D - 265 446 IPR044880 -
Seca3g08082 455 FunFam Vacuolar cation/proton exchanger 118 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08082 Seca-Chr3 206120450 206130965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08082 7 450 Antiporters AT3G13320 66.966 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08082 K07300 - gmx:100806000 689.493