Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08078 ATGGGAATTATCTGGAAGCTTCTTTTCTTCTCTATCTTCTTCCATGCTGTTTCTGCACTCACCTCAGATGGGGTGACTCTCTTGTCACTCATGAGGCACTGGACATTCGTGCCTCCTTCCATAAACTCCACTTGGAATGCCTCTGATTCCACACCATGCTCTTGGGAAGGAGTTGAATGTGACCATGCCCACCATGTGGTTTCCCTTAACCTCACTGGTTATGGGATTTCTGGTAAACTGGGACCTGAAATTGGAAATTTTACTCGGCTAAAGTCCTTAGACCTTACTGCTAACAATCTTAGTGGCCCAATATCTGATGCCTTGAAAAACTTGCAAAAGCTCAAGTATATCAGCCTTTCTAGTAATTTACTACTGAGTGGTGAAATTCCAGATTCCTTGACTCAAATTCCTGAACTATATTTTGTTGATCTGTCTTTTAACAGTTTAACTGGTTCCATCCCCACAAGTATTGGCAACATGACTGAACTCACATTCTTGTATCTTCAGTATAACCAGTTGTCTGGGATAATTCCCTCATCCATTGGGAACTGCAGGAAATTGCAAGACTTGGAATTGGATGAAAATAAATTGGAGGGTGTCCTGCCTCAGAGTCTAAACAATCTTAGTGATCTTGTTTATTTTAATGTGGCCCACAATAGTCTTAGGGGTACCATTCCATTGGGTTCTGGCAGTTGTAAGAATTTAGACTTTTTGGATCTCTCATTCAATGTGTTTAGTGGAGGCCTTCCCTCAGGCTTGGGGAATTGTAGTAGTTTATCACAATTTGCTGCTGTGAACTGTAACTTGGTTGGAAGTATTCCATCTTCCTTTGGTCTACTCACCAAGCTTTCTATTCTATACCTTCCTGAGAACCATTTATCCGGAAAAATACCTCCAGAAATTGGTAACTGCAAGTCTTTGAATGAGTTACAGTTGTATACCAACCGACTTGAGGGAGAGATTCCAAGTGAACTGGGAAAACTGAGTCAACTACAGGACCTTGAATTGTTTTCCAATCAATTGAGTGGTGAAATTCCACTTAGCATTTGGAAGATTCAAAGCCTTGAGTATCTCCTTGTGTATAATAATAACCTTTCTGGGGAACTGCCTCAGGAGATGACAGAGCTGAAGCAATTGAAAAATATCTCATTGTTTAACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTGGGACTTAATAGCAGTCTACTGCAATTAGACTTTACAAATAATAAGTTCACTGGCAACCTCCCACCAAATCTTTGTTTTGGAAAGAAGTTGAGCATACTGGTTATGGGCATCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGAAGGTGTACAACTCTTAGAAGGGTAATTCTTAAACAAAACAACTTTACTGGGCCTCTTCCTGATTTTGAAAGCAACCCCAATCTCACATTTATGGATATCAGCAACAACACAATCAATGGATCCATTCCATCAGGTTTGGGAAACTGCACAAATCTCACTGACTTAATTTTGTCCAGGAACAAATTTACTGGACATATACCCTCAGAGCTAGGAAACCTTGTGTATCTTCGGACTCTGAATCTTGCTCACAACAACTTAGAAGGTCCTTTGCCATTTCAGCTCTCAAACTGTACCATAATGGACAAGTTTAATGTGGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTTTGCAGAGCTGGACAGGGATAAACACATTAATTTTAAGTGAGAACCAATTTAGTGGGGGCATTCCAGCTTTCTTGTCAGAATTTATACAGCTTTCTGAACTACAACTTGGTGGCAATAGGTTTGGAGGCAGAATTCCTGGATCTATTGGAGCATTGCAGGATTTGATCTATGGGTTGAATCTAAGTTCTAATGGGCTGATAGGTGACCTTCCTGTAGAAATTGGAAACCTGAAAACTTTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATAGAAATTCTTGGTGAACTCCCTTCATTAGTTGAAATCAATATTTCAAACAATTCTTTTCATGGTCCTATACCAAATATGCTAATGAAGTTGCTCAATTCTCCCTCATCATCATTTTCGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGCTCAGGTTGCACTGAAAGCAGCTATCTGAAACCATGTGACAACCAATCAACTAATCACAAAGGTCTCAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCAATACTTGTCATTTTGTTGTTGCTGGGATTAGCTTACTATTTTGTTTTTGGAAGAAAATCTAAGCAGGAAGTCCATATCTCTGCTAATGAGGGTTCTTCGCCCCTTCTTAACAAAGTCATGCAGGCTACAGAAAACCTAAATGATCAGTATATTATCGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGGTAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTAGGATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGACCATGGTCTAATTTTGTATAACTACATGCCAAATGGAAGCCTACATGATGTTTTGCATGAAAAGAATCCACCACCATCCTTAGAGTGGAGTGTTCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTACGACTGTGATCCTCCCATAGTGCACCGCGACATCAAACCAAAAAATATACTTCTAGACTCTGATATGGAGCCTCACATAGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTACTTCAAATCCTTCCATATCTGTGCCGGGTACAATTGGTTACATAGCACCAGAGAATGCCTATGCAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGCAACAGATTCCTCATTTATGGAGGGTACTGACATAGTGGGTTGGGTTAGATCTGTATGGAGTGAAACAAGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAGGGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTCATGGTGGCTTTGAGATGTACTGAGCAAGATCCACGCAAGAGACCCACAATGACAGATGTTGTCAAGCAATTATCAGATGCTAATCCACAAGCACGGACAAGAAGTAAGAAGGGCTAG 3246 0.4039 MGIIWKLLFFSIFFHAVSALTSDGVTLLSLMRHWTFVPPSINSTWNASDSTPCSWEGVECDHAHHVVSLNLTGYGISGKLGPEIGNFTRLKSLDLTANNLSGPISDALKNLQKLKYISLSSNLLLSGEIPDSLTQIPELYFVDLSFNSLTGSIPTSIGNMTELTFLYLQYNQLSGIIPSSIGNCRKLQDLELDENKLEGVLPQSLNNLSDLVYFNVAHNSLRGTIPLGSGSCKNLDFLDLSFNVFSGGLPSGLGNCSSLSQFAAVNCNLVGSIPSSFGLLTKLSILYLPENHLSGKIPPEIGNCKSLNELQLYTNRLEGEIPSELGKLSQLQDLELFSNQLSGEIPLSIWKIQSLEYLLVYNNNLSGELPQEMTELKQLKNISLFNNQFSGVIPQSLGLNSSLLQLDFTNNKFTGNLPPNLCFGKKLSILVMGINQLQGSIPPDVGRCTTLRRVILKQNNFTGPLPDFESNPNLTFMDISNNTINGSIPSGLGNCTNLTDLILSRNKFTGHIPSELGNLVYLRTLNLAHNNLEGPLPFQLSNCTIMDKFNVGFNFLNGSLPSSLQSWTGINTLILSENQFSGGIPAFLSEFIQLSELQLGGNRFGGRIPGSIGALQDLIYGLNLSSNGLIGDLPVEIGNLKTLQTLDLSQNNLTGSIEILGELPSLVEINISNNSFHGPIPNMLMKLLNSPSSSFSGNPGLCISCSPSDGSGCTESSYLKPCDNQSTNHKGLSKVAIVMIALGSSILVILLLLGLAYYFVFGRKSKQEVHISANEGSSPLLNKVMQATENLNDQYIIGRGAHGVVYKALVGPDKAFAVKKLGFAASKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDHGLILYNYMPNGSLHDVLHEKNPPPSLEWSVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLDQSSTSNPSISVPGTIGYIAPENAYATANSRESDVYSYGVVLLELITRKKATDSSFMEGTDIVGWVRSVWSETREINQIVDSSLAGEFLDTHIMEKVTKVLMVALRCTEQDPRKRPTMTDVVKQLSDANPQARTRSKKG. 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08078 1081 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 429 711 - -
Seca3g08078 1081 FunFam Serine/threonine-protein kinase-like protein CCR4 868 1081 - -
Seca3g08078 1081 FunFam Leucine-rich repeat receptor-like kinase 24 130 - -
Seca3g08078 1081 MobiDBLite consensus disorder prediction 1054 1081 - -
Seca3g08078 1081 Gene3D Transferase(Phosphotransferase) domain 1 868 1080 - -
Seca3g08078 1081 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 435 1061 - -
Seca3g08078 1081 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 428 - -
Seca3g08078 1081 ProSiteProfiles Protein kinase domain profile. 791 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08078 1081 FunFam Leucine-rich repeat receptor protein kinase EMS1 131 228 - -
Seca3g08078 1081 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Seca3g08078 1081 Pfam Protein kinase domain 795 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08078 1081 Gene3D Phosphorylase Kinase; domain 1 761 867 - -
Seca3g08078 1081 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Seca3g08078 1081 SUPERFAMILY RNI-like 64 396 - -
Seca3g08078 1081 Gene3D Ribonuclease Inhibitor 19 172 IPR032675 -
Seca3g08078 1081 Gene3D Ribonuclease Inhibitor 173 265 IPR032675 -
Seca3g08078 1081 Gene3D Ribonuclease Inhibitor 266 374 IPR032675 -
Seca3g08078 1081 Gene3D Ribonuclease Inhibitor 375 710 IPR032675 -
Seca3g08078 1081 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 757 867 - -
Seca3g08078 1081 SMART serkin_6 791 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08078 1081 SUPERFAMILY Protein kinase-like (PK-like) 774 1067 IPR011009 -
Seca3g08078 1081 ProSitePatterns Protein kinases ATP-binding region signature. 797 820 IPR017441 GO:0005524
Seca3g08078 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Seca3g08078 1081 Pfam Leucine rich repeat 137 197 IPR001611 GO:0005515
Seca3g08078 1081 SUPERFAMILY RNI-like 370 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08078 Seca-Chr3 205852266 205856081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08078 16 1078 Receptor kinase-like Gene Family AT1G73080 54.545 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g08078 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08078 - - gmx:100778035 1634