Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08073 ATGAGCAATAATAACAATAACAATAGCGTGACAAACATGACGTCATCGACGTCTCGGGGTTCAACCTCCTCCTCCAATGGCCTCCTCACCGTCACCATCGCAAGCACCCACCCTGACGAGACCACAACTAACCAAGACGACGACGATTTGCTCGTTGATCCTGACGATCCTTTCGACATTACCCAAACCAAAAATGCACCTCCCGAGACCCTCAAGCGTTGGCGACAAGCAGCATTCGTGCTCAATGCCTCCAGGCGTTTTAGATATACCCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGAGCCCACGCTCAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGTGAACTAGTAGTGACAAGTGCATCAGTCGCATCACCAACTCCAGTTGGTGACTATGGAGTTGGGCTCGAACAACTTGTTTCAATGTCTAAGAATCAGAATCCTTCTGTTTTACAACAATATGGAGGGGTTAAAGGCTTATCAGATTTACTAAAATCAAATATGGATAAAGGGATTAGTGGAGACGATGTGGATGTATCAAAGAGGAAAAATGCGTTTGGAACTAATACATATCCTCGGAAAAAGGGGAAAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACCCTTATAATATTAATTATAGCAGCTGTGGTATCTTTGGTACTTGGAATAAAAACAGAGGGTCTGGAAGAAGGATGGTATGATGGGGGAAGCATCGCTTTCGCAGTTCTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTACAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGTGGCAGAACAGTAAAAATATCGATATTTGAAATTGTTGTTGGTGATTTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATCAGTGGTCACTCACTTTCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAAAAATCACCTTTTCTAATGTCTGGTTGCAAAGTAGCAGATGGATTTGGTTCTATGCTGATAACCGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTACTGTAGCTGCTGCTGTGCTTGCCGTCCTCTTGGGAAGATACTTTTCTGGCCATACGAAAGATCTAGATGGAAATGTGCAATTTGTTGGCGGAAAGACTAGTATTAGTGATGCAGTAGATGGCGTTTTTTCAACTAAATATAGAACTGCGCAGGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACTTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGACTGTCAGCATGCGAAACAATGGGCTCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGCTGGGGGGAAGAAACTAAATCCACCAGATGACTTGTCAAAATTGCATCCAGAAGTCCTATCCCTGATAAATGAAGGCATAGCACAAAATACAACTGGCAACGTTTTCATGTCTAAGGATGGTGGTGAGACAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCCGTGAAGTTGGGGATGAATTTTGATCTTATCAGATCAACTTCAAAAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGGGGTGGTGTTGCTGTGAAACTGGCGGACTCTGGTGTGCATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACTTGTACTCAGTATCTTGATTCAAATGGTCAACGACAATCAATTGAAGAAGAGAAGGCATTCTTCAAGAAAGCTATTGATGACATGGCTGCTCGGAGCTTGCGTTGTGTTGCAATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAATGAGGAGGATTTAGACAAGTGGTCCTTACCAGAACACGAGCTTGTTTTGCTTTCTATTGTTGGAATTAAGGATCCTTGTCGCCCTGGAGTCAAAGATGCCGTGGAAGTATGCACTAGAGCTGGCGTTAAGGTACGCATGGTTACTGGAGACAATCTTCAAACAGCAAAAGCAATAGCCTTGGAATGCGGAATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGACAGAGAACAAGTTGCTAAGAAAATAACGGTGATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTGGTGCAAGCACTGCGTAAAAGTGGTGAAGTTGTTGCTGTCACGGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAGAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTTCGCTGGGGGCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAACTTACTGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAGTATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCACCAACAGACAGTCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGGTCGTACAGGCTGTGTATCAAGTGGCTGTTCTTCTCGTTCTTAACTTTGCTGGTGAAAGTATTCTACATAATAATCAAGATTCCAAAACGCATACCTTACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCCTGTGCCAAATATTCAATGAATTCAATGCTCGAAAACCAGAGGAAATGAACGTCTTCACGGGAGTAACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTTACAACGACAGTGAAGCTTGATTGGAAGCAGTGGCTTGCTTCTCTTTGTATTGGGCTTGTCAGCTGGCCTCTTGCAATAGTTGGAAAATTAATTCCTGTTCCCAAAACACCATTGTCCCGAACATTCTTGAGGGCATTCAGGCGCTTGAAGAAGACTCGTACTGCATAA 3312 0.4233 MSNNNNNNSVTNMTSSTSRGSTSSSNGLLTVTIASTHPDETTTNQDDDDLLVDPDDPFDITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVVTSASVASPTPVGDYGVGLEQLVSMSKNQNPSVLQQYGGVKGLSDLLKSNMDKGISGDDVDVSKRKNAFGTNTYPRKKGKSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTVKISIFEIVVGDLVPLKIGDQVPADGVLISGHSLSIDESSMTGESKIVHKDQKSPFLMSGCKVADGFGSMLITGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLAVLLGRYFSGHTKDLDGNVQFVGGKTSISDAVDGVFSTKYRTAQVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGGKKLNPPDDLSKLHPEVLSLINEGIAQNTTGNVFMSKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSTSKILHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSNGQRQSIEEEKAFFKKAIDDMAARSLRCVAIAYRSYELDKIPSNEEDLDKWSLPEHELVLLSIVGIKDPCRPGVKDAVEVCTRAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKTFRELSEKDREQVAKKITVMGRSSPNDKLLLVQALRKSGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLVVQAVYQVAVLLVLNFAGESILHNNQDSKTHTLQVKNTLIFNAFVLCQIFNEFNARKPEEMNVFTGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVKLDWKQWLASLCIGLVSWPLAIVGKLIPVPKTPLSRTFLRAFRRLKKTRTA. 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08073 1103 MobiDBLite consensus disorder prediction 1 69 - -
Seca3g08073 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 512 518 IPR018303 -
Seca3g08073 1103 Gene3D - 520 717 IPR023299 GO:0000166
Seca3g08073 1103 FunFam Calcium-transporting ATPase 216 273 - -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 710 862 - -
Seca3g08073 1103 Pfam haloacid dehalogenase-like hydrolase 507 831 - -
Seca3g08073 1103 Gene3D - 189 384 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 710 721 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 841 853 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 732 742 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 817 836 - -
Seca3g08073 1103 PRINTS P-type cation-transporting ATPase superfamily signature 510 524 - -
Seca3g08073 1103 PRINTS Sodium/potassium-transporting ATPase signature 503 524 - -
Seca3g08073 1103 PRINTS Sodium/potassium-transporting ATPase signature 629 647 - -
Seca3g08073 1103 PRINTS Sodium/potassium-transporting ATPase signature 251 271 - -
Seca3g08073 1103 Pfam Ca2+-ATPase N terminal autoinhibitory domain 55 98 IPR024750 GO:0005516
Seca3g08073 1103 SUPERFAMILY Calcium ATPase, transduction domain A 286 381 IPR008250 -
Seca3g08073 1103 SMART Cation_ATPase_N_a_2 164 238 IPR004014 -
Seca3g08073 1103 Gene3D - 68 120 - -
Seca3g08073 1103 SFLD p-type atpase 492 869 IPR044492 -
Seca3g08073 1103 SFLD C1.7: P-type atpase like 492 869 - -
Seca3g08073 1103 Gene3D - 507 862 IPR023214 -
Seca3g08073 1103 Pfam Cation transporting ATPase, C-terminus 902 1079 IPR006068 -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 264 384 - -
Seca3g08073 1103 Pfam Cation transporter/ATPase, N-terminus 166 233 IPR004014 -
Seca3g08073 1103 Pfam E1-E2 ATPase 285 488 - -
Seca3g08073 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 517 714 IPR023299 GO:0000166
Seca3g08073 1103 NCBIfam HAD-IC family P-type ATPase 459 535 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08073 1103 NCBIfam HAD-IC family P-type ATPase 784 897 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g08073 1103 SUPERFAMILY HAD-like 508 922 IPR036412 -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 66 122 - -
Seca3g08073 1103 PANTHER CATION TRANSPORTING ATPASE 107 1081 - -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 9 plasma membrane-type 362 534 - -
Seca3g08073 1103 CDD P-type_ATPase_Ca_PMCA-like 190 950 - -
Seca3g08073 1103 Gene3D - 216 1070 - -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 834 1083 - -
Seca3g08073 1103 FunFam Calcium-transporting ATPase 520 717 - -
Seca3g08073 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 165 1081 IPR023298 -
Seca3g08073 1103 MobiDBLite consensus disorder prediction 1 40 - -
Seca3g08073 1103 NCBIfam calcium-translocating P-type ATPase, PMCA-type 154 1081 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08073 Seca-Chr3 205626795 205646057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08073 21 1103 Primary Pumps ATPases AT3G21180 77.227 0.0 1692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08073 K01537 - gmx:100817367 1816.97