Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g08065 | ATGCAATTAGCATCAAACAATGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCATCATCTTAATTTGCAAGCATCCGAAGGAGAGTCTTCGTTTTCGTGTGAAATTATACCTGCTGGGCCTGGGGGGGATTTCACTGCTGCCAACAGTGATGATTTACAGAATGTTCATGTTGATGAGACTTGTCATCTGGTAAATGCAGAGCAGCCACAATGCCGGATATGCCTTGATATTGGAGGGGAGGATTTAATTGCCCCATGCCATTGCAAAGGTACACAGAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACCAAAGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTTCCAGCAGATCGGTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCCAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTAGCTTTCTTGGGAGTGCTTGTTTACAAATTCTATGGAGATGAATTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCAATAATATGTGGCCAAAGAATCAATGAACGTCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACGTGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG | 789 | 0.417 | MQLASNNDKEECSESEPILNQHHLNLQASEGESSFSCEIIPAGPGGDFTAANSDDLQNVHVDETCHLVNAEQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPADRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRERVKNVPELDPSHVTELRMLGLY. | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g08065 | 262 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 129 | IPR011016 | GO:0008270 | |
Seca3g08065 | 262 | Pfam | RING-variant domain | 75 | 122 | IPR011016 | GO:0008270 | |
Seca3g08065 | 262 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 195 | 262 | - | - | |
Seca3g08065 | 262 | CDD | RING_CH-C4HC3_MARCH | 75 | 123 | - | - | |
Seca3g08065 | 262 | SMART | ringv_2 | 74 | 123 | IPR011016 | GO:0008270 | |
Seca3g08065 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 127 | IPR013083 | - | |
Seca3g08065 | 262 | SUPERFAMILY | RING/U-box | 70 | 126 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g08065 | Seca-Chr3 | 205259135 | 205265316 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g08065 | 1 | 221 | C3H Transcription Factor Family | AT1G50440 | 60.360 | 4.75e-90 | 265 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g08065 | - | - | gmx:100789593 | 490.73 |