Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08065 ATGCAATTAGCATCAAACAATGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCATCATCTTAATTTGCAAGCATCCGAAGGAGAGTCTTCGTTTTCGTGTGAAATTATACCTGCTGGGCCTGGGGGGGATTTCACTGCTGCCAACAGTGATGATTTACAGAATGTTCATGTTGATGAGACTTGTCATCTGGTAAATGCAGAGCAGCCACAATGCCGGATATGCCTTGATATTGGAGGGGAGGATTTAATTGCCCCATGCCATTGCAAAGGTACACAGAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACCAAAGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTTCCAGCAGATCGGTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCCAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTAGCTTTCTTGGGAGTGCTTGTTTACAAATTCTATGGAGATGAATTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCAATAATATGTGGCCAAAGAATCAATGAACGTCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACGTGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 789 0.417 MQLASNNDKEECSESEPILNQHHLNLQASEGESSFSCEIIPAGPGGDFTAANSDDLQNVHVDETCHLVNAEQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPADRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRERVKNVPELDPSHVTELRMLGLY. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08065 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270
Seca3g08065 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270
Seca3g08065 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 195 262 - -
Seca3g08065 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Seca3g08065 262 SMART ringv_2 74 123 IPR011016 GO:0008270
Seca3g08065 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Seca3g08065 262 SUPERFAMILY RING/U-box 70 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08065 Seca-Chr3 205259135 205265316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08065 1 221 C3H Transcription Factor Family AT1G50440 60.360 4.75e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08065 - - gmx:100789593 490.73