Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08058 ATGAATTTCACAAGTCATACCAACTTGATAACTGTTCTGCTGATACTTTCCTGCTTTGGCCTGTGCTTGAGTTTTGCCACTGATATGATTACTTCAGTCCAATTCATCAGGGACACTGACACACTAAGCTCAAACAACAGTGACTTCAAGTTAGGATTCTTCACCCCTGAAAATTCAACAAACCGCTATGTGGGAATCTGGTATCTCTCTCAATCCAATGTTATATGGGTAGCTAACAGGAACCACCCACTACCAAAAAACTCTTCTGGGATTGTTAAAATCTCTGAGGATGGCAATCTTGTGGTATTAAATAGCAAGAACAAGCCTGTTTGGTCAACAAATGTGGCACATAATGCAACCAATTCAACTGCCAAACTCTTAAATACTGGAAATCTGGTCTTGCTAGATGGTGCCACAGGGGAAGTTATATGGGAGAGTTTCCAACATCCTTGTGATATTTATGTGCCAAAGATGAAACTCAGTATCAACAAAATTACAGGTAAAAAAGTATACTTGACATCATGGAAAAGCCCTTCTGATCCATCTGTTGGGTACTATTTTGCAACTCTTGAACGCCCCAGTGCTCCTGAATTGTTTCTCTCACTTAATGGAACTATCCCATATTGTCGATCTGGTCCATGGAATGGTCGAATTTTCATTGGATTTCCACAGATGTCAAATGGGTGGAGTTTGATAAATAATGAAGAAGAGGGAACTGTTTATCTTACTTATAATTTCCCAAATCAATCTGAGTTTGGAATCATGGGGTTGAATCCACAGGGCCAACTAACAAGTGCATGGTGGAAAAACAGAAAGGAATTGTGGAGGACAGTGTTCCAAGGAAGTTATTGTGATTTGTATGGCATGTGTGGGGCATTTGGAAGCTGTAATTGGCAGAGCACACCAATATGTAGCTGTTTGAATGGCTATAAGCCTAGAAATCTAGAGGAGTGGAATAGGAGAAATTGGACTGGTGGGTGTGTAAGGAGGGAGGTGCTTCAATGTGGGGGAGAAGGAGTGAGGAAAGATGGGTTTTTGAAACTTCAAAATATGAAAGTGCCAGACTTTGTAGAGAGGTTAGCAGCTTCTTTGGAGAGTGAATGCAGGGATCAGTGCTTGGAGAATTGTTCTTGCGTGGCATATGCATATGAGAGTGGTATTGGGTGCATGGTTTGGAGTGGAGATTTGATAGATATACAAAGATTCTCAAGTGGAGGAGGGGTTGATCTTTACATTCGTGTAGCACCTTCAGAACTAGAAAAACATTCAGGTAAAAGAAGAGATAAGAGATTAATCATTGCAATTGGAGTTACCGTAGGAATGATTACCTTAGCTGGCTCTGCTTATCTCGCATGGAAATGGACTGCTAAATCTAGAGGTAAAGTGATATTAATCATAGGAAAAACAAATTCACAAAGACAGAGAATGAACAAAGGCCAGAAATTGGATGATCAATTACCGCTTTTCAATTTTGAAGAGCTTGCAACTGCTACAAATAATTTTCACCCAGCTAACGTCCTTGGAAAAGGTGGTTTTGGTCCAGTATATAAGGGACAATTGAAAGACGGACAGGAAATAGCAGTGAAAAGGCTTTCAAAAACATCTGGACAAGGGTTAGAAGAATGCATGAATGAGATATTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGGCTTCTTGGCTGCTGTATTGAACAGGAAGAAAGGATGTTGATTTATGAGTACATGCCTAACAAGAGTTTGGATGCATTACTATTTGATCCAGTCAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAGGTATCTCTCGAGGTTTGCTTTATCTCCACAGAGATTCAAGGCTAAAAATTATACATCGAGATTTGAAGGTTAGTAACATCTTGTTGGATGGAGAGATGAATCCAAAAATATCTGACTTTGGTATGGCCAGAATCTTTGGAGGCCACGATTTACAAGCCAATACTAGAAGAGTTGTTGGAACATTTGGCTATATGCCTCCAGAATATGCATTCCGAGGGTTGTTTTCTGAGAAATCAGATGTCTTTAGCTTTGGAGTCTTGCTGCTAGAGATTATTAGTGGGAAAAAAATCAGTAGCTATTATGACCATGACCTATCATTAAGCCTCTTAGGATTTGCATGGAAATTATGGAATGAAAAGGACATCAAATCCCTGATAGACCAAGAAATATGTAATCCAGATTATATGAAAGACATTTTGAGATGCATACATATTGGACTTCTTTGTGTTCAAGAAGTTGCAAAAGAGAGGCCCACTGTGGCTACAGTAGTTTCAATGCTTAATAGTGAGATTGTCAATCTCCCTCTCCCATCATACCCTGCATTCATAGAAAGGCAAATTGTATGGACTGGAGAATCATCTCAGCAGAACTATAAAACATACTCCATCAACAATGTTACTATCACAGACATGCATGGTAGATAG 2460 0.3935 MNFTSHTNLITVLLILSCFGLCLSFATDMITSVQFIRDTDTLSSNNSDFKLGFFTPENSTNRYVGIWYLSQSNVIWVANRNHPLPKNSSGIVKISEDGNLVVLNSKNKPVWSTNVAHNATNSTAKLLNTGNLVLLDGATGEVIWESFQHPCDIYVPKMKLSINKITGKKVYLTSWKSPSDPSVGYYFATLERPSAPELFLSLNGTIPYCRSGPWNGRIFIGFPQMSNGWSLINNEEEGTVYLTYNFPNQSEFGIMGLNPQGQLTSAWWKNRKELWRTVFQGSYCDLYGMCGAFGSCNWQSTPICSCLNGYKPRNLEEWNRRNWTGGCVRREVLQCGGEGVRKDGFLKLQNMKVPDFVERLAASLESECRDQCLENCSCVAYAYESGIGCMVWSGDLIDIQRFSSGGGVDLYIRVAPSELEKHSGKRRDKRLIIAIGVTVGMITLAGSAYLAWKWTAKSRGKVILIIGKTNSQRQRMNKGQKLDDQLPLFNFEELATATNNFHPANVLGKGGFGPVYKGQLKDGQEIAVKRLSKTSGQGLEECMNEILVISKLQHRNLVRLLGCCIEQEERMLIYEYMPNKSLDALLFDPVKKKDLDWPKRFNIIEGISRGLLYLHRDSRLKIIHRDLKVSNILLDGEMNPKISDFGMARIFGGHDLQANTRRVVGTFGYMPPEYAFRGLFSEKSDVFSFGVLLLEIISGKKISSYYDHDLSLSLLGFAWKLWNEKDIKSLIDQEICNPDYMKDILRCIHIGLLCVQEVAKERPTVATVVSMLNSEIVNLPLPSYPAFIERQIVWTGESSQQNYKTYSINNVTITDMHGR. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08058 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 782 - -
Seca3g08058 819 Pfam D-mannose binding lectin 74 176 IPR001480 -
Seca3g08058 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 576 - -
Seca3g08058 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 216 IPR036426 -
Seca3g08058 819 Gene3D Transferase(Phosphotransferase) domain 1 577 778 - -
Seca3g08058 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 763 - -
Seca3g08058 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Seca3g08058 819 SUPERFAMILY Protein kinase-like (PK-like) 484 807 IPR011009 -
Seca3g08058 819 ProSiteProfiles Protein kinase domain profile. 501 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08058 819 Gene3D - 23 148 IPR036426 -
Seca3g08058 819 Gene3D Phosphorylase Kinase; domain 1 464 576 - -
Seca3g08058 819 SMART ntp_6 340 414 IPR003609 -
Seca3g08058 819 ProSiteProfiles Bulb-type lectin domain profile. 27 147 IPR001480 -
Seca3g08058 819 CDD STKc_IRAK 507 773 - -
Seca3g08058 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 147 - -
Seca3g08058 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Seca3g08058 819 SMART blect_4 33 150 IPR001480 -
Seca3g08058 819 SMART serkin_6 501 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08058 819 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Seca3g08058 819 Pfam S-locus glycoprotein domain 210 313 IPR000858 GO:0048544
Seca3g08058 819 CDD PAN_AP_plant 333 415 - -
Seca3g08058 819 Pfam PAN-like domain 340 399 IPR003609 -
Seca3g08058 819 CDD B_lectin 41 150 IPR001480 -
Seca3g08058 819 ProSiteProfiles PAN/Apple domain profile. 335 415 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08058 Seca-Chr3 205094378 205098823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08058 489 819 Receptor kinase-like Gene Family AT4G11530 56.213 6.50e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08058 PK_Tyr_Ser-Thr 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08058 - - gmx:100800296 1209.51