Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08057 ATGATTTCTTTTAAGAAAAGGCCTTCTTCCTATAGAGACTTCATTTCTCTCTCTAGGCTAAGCATAGATAAAAACAAGGAGAAGAAGAGGAAGAACCCTCTTTACACTCTTTTGAGTCAAGGAGATCACGTGGCACGCAAGAGAGTGAGGGCGGCATTGAGGTTGTTCAATACTACTTGTAGGAACTACGCGAAGAAAGGGGTTCCTATAGCACTTCAGGATGCGGCTAAGGATCTTCAAGTTAAAGGCAAGTTCGTCAACCCAGGGAAACAAATTATAGGATCTGTCCCTGGAGTTGAAGTCGGTGATGAATTCCTGTACTGGAGGGAGTTTAACGTTGTCGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATCTCAATGTTAATGGCATGTTGCTCGCTACTAGCGTTGTTTCGAGAGGGATTTACGATGATGATGTGGAGGACACAAATGAGTTAGTTTATATGGGGGAGGGAGGCAATGTGATAAAGAAAGAAAGGAAACCTAAAGATCAGAAACTTAAAAGGGGTAATCTTGCTTTGAAGAACAGTTTCGAGGTTAAGAATCCGGTTAGGGTTATACTCAAGTCTGGGTCAAAGGATGAAGGTTCTAATATGTATGCTTATTATGGGCTTTATCAAGTTGATAAGTATTGGCATGAGAAAGGGTTAAATGGTAAGTTGGTTTACAAGTTCAAATTGAAAAGAATGCCTGATCAAGCAGAGGTTCCTTGGAATGAGCTAAAGAAATCTCAAAGCCTGGAAGGTAGGGAGGGTTTGTGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATGTGCCATTAATACTGTGGATGATGAAGGGCCACCTATGTTTGAATACATGACTCGCATGGTGTATCCTAATTTGTGCAACCTCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATGTTGTGACTCGGCGAAATGTTCATGTGTAGAGAGGAATGGGGGTAAAATCCCATTCAATGGGAAAAAGGCTGTTGTGGTAGGAAGGCCTAATTGTATAGTCTATGAGTGTGGTCCTTCATGTAAGTGCCCTCCAACATGCCAAAACAGGGTTAGCCAACATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTTGTATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAATAGGGCTAATAATGATGAGTATCTATTTGATATTGGGAATAACTATAGTGATGATACCCTCTGGGAAGAGCTTTTGGCGATTAATCCTGACATAGGGTTGAGTTCTTCTTCTCAAGTAATTGAGCATGGTAGCTTCACAATTGATGCTTCACACCGTGGTAATTTTGGGAGGTTTATTAACCACAGTTGCTCCCCTAATCTTTTTGCTCAAAATGTCCTTTATGATCACGATGACAAAAAGATTCCTCACATAATGTTGTTTGCGGCTGACAACATTCCCCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATAGATCAAGTTTGTGGTGCTGATGGAAATATAAGGAAGAAAAATTGCTATTGCGGTGCTCTGGAGTGTACTAGTAGGATGTATTAA 1641 0.4071 MISFKKRPSSYRDFISLSRLSIDKNKEKKRKNPLYTLLSQGDHVARKRVRAALRLFNTTCRNYAKKGVPIALQDAAKDLQVKGKFVNPGKQIIGSVPGVEVGDEFLYWREFNVVGLHRQITRGIDYLNVNGMLLATSVVSRGIYDDDVEDTNELVYMGEGGNVIKKERKPKDQKLKRGNLALKNSFEVKNPVRVILKSGSKDEGSNMYAYYGLYQVDKYWHEKGLNGKLVYKFKLKRMPDQAEVPWNELKKSQSLEGREGLCVNDISYGKELIPICAINTVDDEGPPMFEYMTRMVYPNLCNLIPYVGCDCVDGCCDSAKCSCVERNGGKIPFNGKKAVVVGRPNCIVYECGPSCKCPPTCQNRVSQHGIQFRFEIFKTKTKGWGVRSLNSIPSGSFVCEYTGELIEFEEAKNRANNDEYLFDIGNNYSDDTLWEELLAINPDIGLSSSSQVIEHGSFTIDASHRGNFGRFINHSCSPNLFAQNVLYDHDDKKIPHIMLFAADNIPRMQELTYNYNYKIDQVCGADGNIRKKNCYCGALECTSRMY. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08057 546 ProSiteProfiles Post-SET domain profile. 530 546 IPR003616 -
Seca3g08057 546 ProSiteProfiles SET domain profile. 372 516 IPR001214 GO:0005515
Seca3g08057 546 SMART preset_2 263 356 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g08057 546 Gene3D SET domain 258 546 IPR046341 -
Seca3g08057 546 Pfam SAD/SRA domain 93 241 IPR003105 -
Seca3g08057 546 SMART set_7 372 522 IPR001214 GO:0005515
Seca3g08057 546 ProSiteProfiles YDG domain profile. 94 237 IPR003105 -
Seca3g08057 546 Pfam SET domain 383 516 IPR001214 GO:0005515
Seca3g08057 546 SUPERFAMILY PUA domain-like 83 252 IPR015947 -
Seca3g08057 546 Gene3D - 78 257 IPR036987 -
Seca3g08057 546 Pfam Pre-SET motif 266 364 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g08057 546 SMART G9a_1 89 241 IPR003105 -
Seca3g08057 546 SUPERFAMILY SET domain 259 522 IPR046341 -
Seca3g08057 546 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 538 - -
Seca3g08057 546 ProSiteProfiles Pre-SET domain profile. 307 369 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08057 Seca-Chr3 205074473 205076113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08057 81 546 EF-hand Containing Proteins AT5G13960 39.796 4.22e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g08057 SAD_SRA 8.1e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08057 K11420 - lang:109363359 687.182