Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08052 ATGCTGCTTCAAATTCACATAAATTCCTTTCTCCCACCTTCGTTTCCACCCAAGATTGAGCCCTGTTTTTTATTCAGCAAGTGCGTCACATTCACAAATCCTCCCGAGTCTGAATTCGGTCTTCAGTATTATTATCATGATAAACCAAATTCAAGAACAAGTTCAAATCCGCGTTGTCGTTCGGGGATGAGGGAGCCACTTTCATCACTCTCTGAATGGGAACTACAGGAAGGTCGTATTGCCGTTTCAACTTTTCTTCAACAATTTGGAGTCTCGGAGGAGGAATCGCTATCCATCGCATCGAAATCACCTTCTTATCTGAACATGTTAGTGGAAGGTGTCAAGGATTTGGAGCAGCTTTCGATGTGGGATTCCAATTCCAATTCTGGTGACTTCAACTTCCGTGACAAGCTTCTTCACATTGCTGCTCAAAAAGGTGACAATGGCAAACTCGCTTATTTAGAGAGTCTCGGTTTTACTCTCTATTCCTCTATGAATATCGCAAGGTATCTATCCACTGACACACTACCATCTCTCATACACAAGGTTACATCTATCAAGCAACTCTTGTTTCCTCCAACTCCTTCTGATTCTCATGAATTGCTTATCAAAAGTATTCGCCGCATGATGCGCTACTTATCGATTTCAATTGATGAAGATCTACAACACACTCTTTCGTTTTTCGAAAAGGTTGAAGCAAGACGCGGAGGTCTGAACATTTTGGTTTCCAACGATGATGCAGCTTTCTGTTACTTGATTGAATCGTTTCCTCGTCTGCTTTTGTTATCTGTAGACAATCACGTGACGCGTGTTGTGAATTTTTTTGAGAATATTGGAATCCCTAGAAATCGCATCCCAAATATAATATTGGGTTTTCCTCCTATTCTTTTGTGGAATCTTCAAGTTCTTAAAACTAGAGTACTGGCATTGAAGGAGATTGACATAGTGGATAAAGATTATGCCAGGTTGATGCTAACATATCCTTGGGTTCTATCTACAAGCATTCAAGAGAACTATGAGGAGGTCCTTGAGTTTTTATATACTGAGAAGGTTCCAATGACATGGATAGACCATGCAATCAAAAGCCAACCTCATCTACTGGGTTGTTCACCTAGCACACTGAAGTTGATGCTGGATCAGTTTGCTGAACTAGGAGTTCAAGGCAAAAAGTTGGATCAGGTTATTGCTAAAAGTCCTCAGCTACTATTACGGAAGCCCAGAGACTTTCTACAGAATACCCATCAAGAAGGTGACCTACTCAATTACATTCCACATCCATCTAACATGTTATCCATGCTGCCAAGCACCAATTCAGGATCCAAGAGCATGCCTTGTGCACTCAGCTTCCTGGCTCTATCTCATCCAAAACCTATTTGTTGTCCATTAAAGCATTATTTCCTTTCTTTTCCTCTATCAGTATAA 1422 0.4086 MLLQIHINSFLPPSFPPKIEPCFLFSKCVTFTNPPESEFGLQYYYHDKPNSRTSSNPRCRSGMREPLSSLSEWELQEGRIAVSTFLQQFGVSEEESLSIASKSPSYLNMLVEGVKDLEQLSMWDSNSNSGDFNFRDKLLHIAAQKGDNGKLAYLESLGFTLYSSMNIARYLSTDTLPSLIHKVTSIKQLLFPPTPSDSHELLIKSIRRMMRYLSISIDEDLQHTLSFFEKVEARRGGLNILVSNDDAAFCYLIESFPRLLLLSVDNHVTRVVNFFENIGIPRNRIPNIILGFPPILLWNLQVLKTRVLALKEIDIVDKDYARLMLTYPWVLSTSIQENYEEVLEFLYTEKVPMTWIDHAIKSQPHLLGCSPSTLKLMLDQFAELGVQGKKLDQVIAKSPQLLLRKPRDFLQNTHQEGDLLNYIPHPSNMLSMLPSTNSGSKSMPCALSFLALSHPKPICCPLKHYFLSFPLSV. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08052 473 PANTHER CGI-12 PROTEIN-RELATED 203 385 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 Pfam mTERF 272 404 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 SMART mt_12 286 316 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 SMART mt_12 357 387 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 SMART mt_12 203 234 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 SMART mt_12 250 281 IPR003690 GO:0003690|GO:0006355
Seca3g08052 473 Gene3D Transcription termination factor 3, mitochondrial 238 415 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08052 Seca-Chr3 204862740 204868592 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g08052 mTERF 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08052 K15032 - gmx:100802127 450.284