Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08049 ATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTACAGTACAGCATGCAGAGAAGCACTTACAGCACAACAGAAGTTAATGGAGCTGAACCACTGGAGAATAGAGGAAGAAAAAAAATTAGAAGAGGCACAATTGGCCCAGGAAGCTGCGTTAGCAATTGCAGAGAAAGAGAAAGCAAGGAGTAAGGCAGCAAATGAAGCAGCTGAAGCAGCTAAAAAAATTGCAGAGGTGGAATCAGATAGAAGAGCTAATGTTGAAGTTAAAGCTGTAAAAGAAGCAGAGGAAATGAGGAAGCTATTGGATAATCTAGCCCAAACTGATGTTGACATTCTGAGCTGTATGCGCCACCCAAACTTGGTGCTTCTTCTAGGGGCTTGTCCAGAATATGGTGTATTAATCTATGAATATATGGCAAAAGGAAGCCTAGATGATTGTCTCTTTAGAAAAAAGAACAGTAGGGTTCTACCCTGGCAGGTCAGGTTCCGAATTGCAGCTGAGATAGCCACTGGCTTACTATTCCTCCATCAGACCAAGCCTGATCCTTTAGTGCACCGTGATTTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTAAGCAAGATAAGTGATGTTGGGTTGGCAAGGCTTCTCCCTGCAGTAGCTGAAAATGTGACACAATGCCACATGACATCAGCAGCTGGAACTTTCTGTTACATTGATCCTGAGTATCAACAAACAGGAATGTTAGGTGTCAAGTCAGATGTTTATTCTCTTGGGATCATATTTCTACAAATATTGACTGGAAAGCCTCCAATGGGATTGGCTCACCATGCTGGACAGGCTCTAGAGGATGGCACATTTGGGGAATTGCTGGACCCTTCTGTCCCTGATTGGCCTCTTGAAGAATCCTTGTGCCTTGCAAACATTGCAATCAAATGTGCAGAACTCAGGCGAAAAGATAGGCCAGACCTTGGGGAAGTAGTGTTGCCAGAACTCAATAGACTGAGAGAATTTGCAGAAGAAAAGATGAGTCCTATCTTTTTGTTAGGAGCCTCTAGTTGCAGTGCTGCACCTTCCCCCATCCACAGTGAAGCTTCCACGCAACAGGATGTGATGAGTGATCCACTGCTTATAGGTTCTGGAAGCTCTAGAAGTGCATCAACCCCATCAACACCAACAGAAGGAAAATCCTAA 1185 0.4397 MRRLKLELKQTMEMYSTACREALTAQQKLMELNHWRIEEEKKLEEAQLAQEAALAIAEKEKARSKAANEAAEAAKKIAEVESDRRANVEVKAVKEAEEMRKLLDNLAQTDVDILSCMRHPNLVLLLGACPEYGVLIYEYMAKGSLDDCLFRKKNSRVLPWQVRFRIAAEIATGLLFLHQTKPDPLVHRDLKPGNILLDQNYVSKISDVGLARLLPAVAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQILTGKPPMGLAHHAGQALEDGTFGELLDPSVPDWPLEESLCLANIAIKCAELRRKDRPDLGEVVLPELNRLREFAEEKMSPIFLLGASSCSAAPSPIHSEASTQQDVMSDPLLIGSGSSRSASTPSTPTEGKS. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08049 394 ProSiteProfiles Protein kinase domain profile. 56 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08049 394 SMART serkin_6 55 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08049 394 Pfam Protein kinase domain 81 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08049 394 FunFam U-box domain-containing protein 51 140 339 - -
Seca3g08049 394 Coils Coil 49 83 - -
Seca3g08049 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca3g08049 394 Gene3D Phosphorylase Kinase; domain 1 69 143 - -
Seca3g08049 394 Gene3D Transferase(Phosphotransferase) domain 1 144 343 - -
Seca3g08049 394 PANTHER OS02G0152300 PROTEIN 1 108 - -
Seca3g08049 394 SUPERFAMILY Protein kinase-like (PK-like) 92 326 IPR011009 -
Seca3g08049 394 MobiDBLite consensus disorder prediction 353 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08049 Seca-Chr3 204847637 204849927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08049 1 347 Receptor kinase-like Gene Family AT1G78940 59.850 1.37e-155 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g08049 Pkinase 5.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08049 - - zju:107428085 465.692