Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08046 ATGCTAATGGGCGCGCGCTCTGCTTCGCTTGTGCGCGCACCTACAGCATCCAATAATGTCAAGTTGTCATTCACCTTGGTTAACATTGTTCTTTTGATATTGGTTTCATCATGTTCAAGCGAAAAGGATGCTGCGACGCTATGGAAGTTCAAGGATTCAAGCACAGCGGATGCTGAGGCGCTATGGAAGTTCAAGGATTCATTGACGAATGTGGTAGCCCTTAGTAGTTGGGATCCAACCATAAACCCAAGGCCACCTTGCTCTGGCAATGTCCCAAATTGGGTGGGTCTGTTTTGTATGAATGATAGGGTTTGGGGATTGCGCCTTGAGAGCATGGGCCTAACCGGCATCATCGATTTGGGATCTCTGGGTTCAATGCCTGCATTACGGTCACTTAGCCTAATGAACAACACCTTTGTGGGTCCCTTACCTAACGTCAAGTTGCTGCCAAATTTGAGGGCCATCTACTTGTCCTTTAATCATTTTTCAGGTGAGATACCTGACGATGCATTTGTTGGTTTGGATAAGTTGAGGAAAATTTATTTGGCAAATAACGAGTTCACTGGGAAAATTCCTTCCTCCCTCGCTACCTTGCCTAGCCTCCTTATCCTCAAGCTCGACTCAAACAAGTTTCATGGTCAAATCCCTAATTTTCCACACAAATATTTGAAGATTATCAACCTTTCTAACAACGAGTTAAAGGGTCCCATCCCGGCCAATCTAAGTACCTTCGACCCCTCCTCCTTTAGTGGAAACATAGGTCTATGCGGGCCGCCCCTGAAGAATGAGTGCCAAGCTGAAGCCCCAATCCCAGGGGCAAGTGTGTCTGGCAAAATGCGCATTATGAAAATTTTACTTATTGTGATTTTGATAGCATTAATAATAGCTATCCTAGTTGCAGTATTGGCCACATGGCGCTTGAGGTCCCAAAATGAGCCTGAGCATCAAGTCTCAGCCTTAAAGTTACAGGCGCAGGCCTCTAACAAAAATGTTCATCCCGTTTATGTGAAAACCAAAAGCCTAGCGGAACACTATGAATCTAATTCTAAGCAAGGATCAGAATATGGTTATGGACATTCCAAGAAAGGGGAACAAGGGAAGTTGACATTCCTCAAGAATGACAATCTAAAGTTTGATTTACAAGATTTGCTAAAGGCCTCTGCTGAAATTCTTGGTAGTGCCTCATTTGGGTCTTCCTACAAGGCAGTGATTTCAGATGGCCAAGCTGTGGTTGTTAAGAGGTATAAGCAAATGAACAATGTGCCAAGAGATGAGTTTTATGAACACATGAGAAGGCTAGGCAATCTCAACCATCCTAATCTTCTACCTCTACTCGCCTATTATTATAGAAAAGAAGAGAAGCTCCTGCTCTCTGCCTTTGTTTACAACGGTTGCTTGGCTAGCCATCTTCATGGTAATCATAACTATCAAAAGCCAGGGCTTGATTGGCCAACCCGATTGAAAATCGTTAAAGGAGTAGCTAAGGGTTTGGCTTACCTATATAGTACACTCCCAAGCCTGATCGTGCCTCATGGACACCTCAAATCTTCCAATGTGCTTTTGGATGAATCTTTTGAGCCTTTACTCACAGATTATGCCCTCAGTCCTTTAATCAATCTTGACCATGCCCAACAAGTCATCATGCCTTACAAATCCCCTGAGTATGCTCAACTTGGCCGCATTACAAAGAAAACTGATGTATGGAGTTTTGGAATTCTGATATTGGAGATCTTAACGGGCAAATTCCCAGAGAACTATATCTCACACAGGCATAAGAGTGATTCTGACATAGCTAGTTGGGTGAATGTGATGATTACTGAGAAGCGTACCGGTGAGGTGTTTGACGTAGAGATGGGAGGAGTTGGAAATAGTAAAGCTGAATTGATCAAACTTTTAAAGATTGGCTTAAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGATATCAAGGAAGCTCTTGAGCAAATTGAAGACTTGAAAGAAGGGGAAAGTGATGGGGAATACTCTTCATCTCTCATCTCCAATGAAAGGGATGCTTATAGAGCTGTGTGA 2052 0.4332 MLMGARSASLVRAPTASNNVKLSFTLVNIVLLILVSSCSSEKDAATLWKFKDSSTADAEALWKFKDSLTNVVALSSWDPTINPRPPCSGNVPNWVGLFCMNDRVWGLRLESMGLTGIIDLGSLGSMPALRSLSLMNNTFVGPLPNVKLLPNLRAIYLSFNHFSGEIPDDAFVGLDKLRKIYLANNEFTGKIPSSLATLPSLLILKLDSNKFHGQIPNFPHKYLKIINLSNNELKGPIPANLSTFDPSSFSGNIGLCGPPLKNECQAEAPIPGASVSGKMRIMKILLIVILIALIIAILVAVLATWRLRSQNEPEHQVSALKLQAQASNKNVHPVYVKTKSLAEHYESNSKQGSEYGYGHSKKGEQGKLTFLKNDNLKFDLQDLLKASAEILGSASFGSSYKAVISDGQAVVVKRYKQMNNVPRDEFYEHMRRLGNLNHPNLLPLLAYYYRKEEKLLLSAFVYNGCLASHLHGNHNYQKPGLDWPTRLKIVKGVAKGLAYLYSTLPSLIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQVIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYISHRHKSDSDIASWVNVMITEKRTGEVFDVEMGGVGNSKAELIKLLKIGLSCCEENVERRLDIKEALEQIEDLKEGESDGEYSSSLISNERDAYRAV. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08046 683 Gene3D Transferase(Phosphotransferase) domain 1 461 669 - -
Seca3g08046 683 Gene3D Ribonuclease Inhibitor 221 261 IPR032675 -
Seca3g08046 683 SUPERFAMILY Protein kinase-like (PK-like) 389 657 IPR011009 -
Seca3g08046 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 31 661 IPR046959 -
Seca3g08046 683 ProSiteProfiles Protein kinase domain profile. 385 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08046 683 Gene3D Phosphorylase Kinase; domain 1 352 460 - -
Seca3g08046 683 Pfam Leucine rich repeat N-terminal domain 56 99 IPR013210 -
Seca3g08046 683 Pfam Leucine rich repeat 150 211 IPR001611 GO:0005515
Seca3g08046 683 FunFam pollen receptor-like kinase 1 355 460 - -
Seca3g08046 683 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 120 215 - -
Seca3g08046 683 Gene3D Ribonuclease Inhibitor 53 219 IPR032675 -
Seca3g08046 683 Pfam Protein kinase domain 389 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08046 683 SUPERFAMILY L domain-like 84 243 - -
Seca3g08046 683 FunFam Pollen receptor-like kinase 1 461 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08046 Seca-Chr3 204754038 204757304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08046 56 679 Receptor kinase-like Gene Family AT5G35390 49.843 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g08046 Pkinase 3.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08046 - - gmx:100801053 954.125