Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08041 ATGGAACTACGAGGACACTTTCCAGGGAACATATCAGGGCAGGTACCTAATCAAGCAGGGTCTCAATTGCCTGCCACGATTCAACTGAATGGAAATACCCTCTCTCAGGTGCCAAATTTAGGTGTTTTTTCACACTCAACAATCAATATGGACCCTGAATTTCTTAGAGCTCGTACTTTTATGCAAGAGAAGATATGCAATATACTATTGCAGCGGTACCAGCATCCCATTGCAGAAGTCCATAGAAGGAAGGTTAAGGATCTTGCAAAACGCCTGGAGGAGGGCATGTTAAAAGCTGCTATCTCTAAGGAGGACTACATGAACTTGGATACACTAGAGACTCGTTTGTCTAATGTCTTGAGACGATCATCTAACAATCACAACCAACAATATCCACAACTTGTCAGCTCTTCTCCAATTGGTACAATGATACCAACCCCTGGTATGTCGCATGTTACAAATTCAACCATGGTTATTGCTTCTTCTGTGGATGCCTCAGTGGTTGCTGCCAGTGGGTTTAATAGCATAGCATCCACATTTGTCAATAGTCCAAGCATGTTACTGGAAGGTGGCATACTTGGCAGTTATTTGAATAGATCTGATGGTTTGTCTAATGGTTACCAGCAGTCTTCTACCAATTTTTCCATTGGTTCAGGAGGAAACATGTCTTCAGTGGGGGTGCAAAGAAATTCAAGCCAGATGATCCCCACTCCTGGATTTAGTGTCAGCAATAATCATTCATATATGAATGTAGGTCCTTCAACTAATAGCAGTGTTTTTTCTGGTGTTGATTCTACATTGGTATCACAGTCACAGTCCCAGCAGCAGCATCAGAAGCTGCAAGTCAGTGGCCACACCAACCATGTATTGCACAACCTTGGCAATCAAATGGGTAGTGGAATGAGATCTGGTTTACTGCAAAAATCATTTGCACATCCAAATGGTTCTATGAATTCTGGGCTAGGCTTGATTGGAAATAACATACAACATGCAAATGAACCTGGCTCTGATGACTTTCCCTCAACTTACACTAATTCCCCTAAACACTTACAGCAGCACTTTGATCAAAATCAGCAACCTATAGCACAGGAAAGGATAACAATCTCATTGTCAGGTGATGGATATGGATTGAGTAGTGTTGACACTTTTGCTTCTGGAAATTTTTATGCATCTGCGACATCCGCTGGGTCTACAATGAACACTCAGAATATGAATTCAGTAACATTGCCATCAATACCCAAAACCAGCTCATTGATAAGTGGTCACTCGAATTTGCACAGTATGCATCAGACTACTCAACAAAAGTCTCAAGCAATTAATGCCTTGGGAAATTTGAATTTTCAATCTTCAAGAGATGGCCTTGTGCATACTCAACAGCAGTATCAGCAGAGACCCCAACAATGTCAACAGTCAGAGCAGTACGCTCAGCAGCAATTTCAGCAGAATCTGCAAAGTCAGCAACCTCACTATTTGGTCAATGGTGATGCCTTCTCTCAGTCTCAGCTCTCTTCCAGTCTAGACAATATAGTGAAGTCTGAGCCTGGAGTTGTTGAACAACATAAAGAAGTTCCCAATTCTCACATTTCTGAACAGTTCCATGTATCTGAGATGCAGAACCAGTTACAGCCGAACTCTTCTGAAGATGGCTCTAGGGTTGCTGAACATCATTCTTTTTCCTCTGCTCAGCATGGTTTAGCCTCATCAACATCTCAAATTTCACAACAAATGTTACACCCACATCAATTGGTTTCAGAGTCTCAAAATAATATTTGCTATCTTTCTGCTGGGTCACAATCCAAATCCACACTTCTAAATCAATGGCCTCAATCACAAGATGGAAACCACATTCCTGGGAGTATGTCACATGAGCAGCAATTCCACATGGACTTTCACCAAAGAATATCAGGGCAAGGCGAAGCTCAATGCAATAATTTATCATCAGATGGATCTATTATTGGTCAAGGTGTTGTTTCTAGAAGCTCAGCTGAGCCGCTAGACTCAAGCAGTATTATCACGAAGTCACACAGGAATCAACAGAGGTGGCTTTTATTTTTACTTCATGCTCGACGATGTTCTGCCCCAGAAGGGCGATGCCAAGAACGCCATTGTTCTAGTGCACAGAAGTTGTGTAATCACATAGATGGATGCAATTTACCTCGTTGTCCATATCCTCGTTGTCATCATACCAGAGAATTGCTTCGCCATTTCATAAAATGCAAGGATCCATCTTGCCCTGTTTGTGTTTTGGTAAGAAAGTATCGACGTGCATTTCAAGTTAAGCCCCAGATTCGGCCAGATCCTGAGTCAGGTTTACCAATTGCTTCAAACGCATCCTGTAAATCCTATAACATAGTAAGCCCATCACCTAGGTTGATCTCAAAGTCTCCACTAGTGGTTGAAACATCGGAAGACCTGCACCCATCTTTAAAACGTATGAAAATTGAGCAATGCACCCAGTCCATTAATCCTGAATATGGCAATTCTGCTTCATCTGTTCCTCTAAAGTGTGAATCACGAGATTTCAAGGATACTCAATGCCAAGCCTTTCCCTGTGGTGACATGTCTATGTCAACTAAATCTGAGCATACAGAAGTTAAGGCAGATGTTCTGGTGCATTCAGTAGATGAAAATCTTAATGAGATGAAAATGGATGAGGATAGTGCAGATGAGAAAAGGCCTGCTGGTGAGCCTGTCTCATATGATGATTCTGCTAATATAACTAGGCCAGAAAATATTAAAACTGAGAAAGAAACTGGACAAGATAAGCAAGAAAATGTGACCCTACCGTCTGAAAATGCAGCTGGAACCAAGTCTGGTAAGTCAAAAATAAAGGGGGTCTCAATGACTGAACTGTTTACTCCAGAGCAAGTCAGGGAACATATCAAAAGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAAGCAGAGAAGAACCAAGCAATGGAGCATTCAATGAGTGAGAATTCCTGTCAATTGTGTGCTGTAGAGAAGCTTACTTTTGAACCACCACCTATTTATTGCACAACGTGTGGTGTTCGCATTAAACGAAATAATATGTATTATACCATGGGTACTGGTGATACACGGCATTATTTTTGTATTCCCTGCTATAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGGACTCCTTTTCCTAAGTCAAGATTGGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACTGCAAAATGCTGTTCTTGGAGCCAAGGATTTGCCGAGAACAATTCTAAGTGACCACATAGAGCAACGGTTATTTAAGCGACTAAGGCAAGAAAAACAAGAGAGGGCCAGGATTCAAGGGAAAAGTTATGATGAGGTGCCCAGTGCTGAATCACTTGTTATAAGAGTCGTGTCATCTGTTGACAAAAAATTAGAAGTTAAACCGCGTTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAGCAGAATTCCCATATAAATCAAAGGTAGTTTTGTTGTTCCAGAAAATTGAAGGTGTTGAAGTATGCCTCTTTGGCATGTATGTTCAAGAATTTGGGTCTGAATGCCAATTTCCGAATCAGCGTCGGGTTTATCTTTCATATCTGGACTCTGTCAAGTATTTTAGGCCAGAGGTTAAAGCAGTTACTGGAGAGGCACTTCGGACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAACTTAGGGAATGGTACCTGTCCATGTTAAGAAAAGCTGCCAAGGAGAATATTGTTGTTGGTCTCACCAACTTATACGACCATTTCTTTGTATCTACTGGGGAATGTAAGGCTAAGGTTACAGCTGCAAGGCTCCCATATTTTGACGGTGACTATTGGCCTGGGGCTGCTGAGGATTTGATTTATCAGATTCGCCAAGAGGAAGATGGGAGAAAAAATAATAAGAAAGGAACAACCAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCTGATCTTTCTGGAAACGCCTCAAAAGATCTGCTCCTAATGCACAAACTCGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGTTGTATTCTAATGGTGTCTGGCAACCGTTGGGTTTGCAACCACTGCAAGAATTTTCAGATTTGTGATAAGTGTTATGAAGTAGAACTAAAGCGTGAAGAGAGAGAACGGCATCCAATTAATCAGAGGGAGAAACATACCCTTTATCCTGTTGAAATTACTGATGTACCTGTCGATACAAAGGACAGAGATGAGATTCTTGAGAGTGAATTCTTCGACACTAGACAAGCATTTCTGAGTCTCTGCCAGGGGAACCATTATCAATATGATACACTAAGGCGGGCCAAGCATTCCTCAATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACAACATGTAATATATGCCATCTTGACATAGAAACTGGTCAAGGTTGGCGTTGTGAAGTTTGCCCTGAGTATGATGTATGCAACGCTTGTTATCAAAAGGAGGGGGGCACTGATCATCCTCATAAATTGACAAATCATCCATCAATGGCAGATCGTGACGCTCAGAACAAAGAAGCAAGGCAAGTTCGAGTGTTACAGCTACGGAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCACATTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATGGAATGCATTGCAAAGTACGTGCTTCCGGAGGCTGTGTTCTTTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGTAAGGAATCTGAGTGCCATGTACCGCGTTGCAGGGATTTAAAAGAACATTTAAGGAGGTTGCAGCAACAGGCTGATTCAAGGCGAAGAGCTGCTGTGATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCCAACAATGCTGGATGA 5217 0.4156 MELRGHFPGNISGQVPNQAGSQLPATIQLNGNTLSQVPNLGVFSHSTINMDPEFLRARTFMQEKICNILLQRYQHPIAEVHRRKVKDLAKRLEEGMLKAAISKEDYMNLDTLETRLSNVLRRSSNNHNQQYPQLVSSSPIGTMIPTPGMSHVTNSTMVIASSVDASVVAASGFNSIASTFVNSPSMLLEGGILGSYLNRSDGLSNGYQQSSTNFSIGSGGNMSSVGVQRNSSQMIPTPGFSVSNNHSYMNVGPSTNSSVFSGVDSTLVSQSQSQQQHQKLQVSGHTNHVLHNLGNQMGSGMRSGLLQKSFAHPNGSMNSGLGLIGNNIQHANEPGSDDFPSTYTNSPKHLQQHFDQNQQPIAQERITISLSGDGYGLSSVDTFASGNFYASATSAGSTMNTQNMNSVTLPSIPKTSSLISGHSNLHSMHQTTQQKSQAINALGNLNFQSSRDGLVHTQQQYQQRPQQCQQSEQYAQQQFQQNLQSQQPHYLVNGDAFSQSQLSSSLDNIVKSEPGVVEQHKEVPNSHISEQFHVSEMQNQLQPNSSEDGSRVAEHHSFSSAQHGLASSTSQISQQMLHPHQLVSESQNNICYLSAGSQSKSTLLNQWPQSQDGNHIPGSMSHEQQFHMDFHQRISGQGEAQCNNLSSDGSIIGQGVVSRSSAEPLDSSSIITKSHRNQQRWLLFLLHARRCSAPEGRCQERHCSSAQKLCNHIDGCNLPRCPYPRCHHTRELLRHFIKCKDPSCPVCVLVRKYRRAFQVKPQIRPDPESGLPIASNASCKSYNIVSPSPRLISKSPLVVETSEDLHPSLKRMKIEQCTQSINPEYGNSASSVPLKCESRDFKDTQCQAFPCGDMSMSTKSEHTEVKADVLVHSVDENLNEMKMDEDSADEKRPAGEPVSYDDSANITRPENIKTEKETGQDKQENVTLPSENAAGTKSGKSKIKGVSMTELFTPEQVREHIKSLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTPFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLLQNAVLGAKDLPRTILSDHIEQRLFKRLRQEKQERARIQGKSYDEVPSAESLVIRVVSSVDKKLEVKPRFLEIFQEENYPAEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAAKENIVVGLTNLYDHFFVSTGECKAKVTAARLPYFDGDYWPGAAEDLIYQIRQEEDGRKNNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACTHCCILMVSGNRWVCNHCKNFQICDKCYEVELKREERERHPINQREKHTLYPVEITDVPVDTKDRDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCEVCPEYDVCNACYQKEGGTDHPHKLTNHPSMADRDAQNKEARQVRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKVRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQADSRRRAAVMEMMRQRAAEVANNAG. 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08041 1738 ProSiteProfiles Zinc finger ZZ-type profile. 1560 1613 IPR000433 GO:0008270
Seca3g08041 1738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1057 1105 IPR013083 -
Seca3g08041 1738 ProSitePatterns Zinc finger PHD-type signature. 1033 1104 IPR019786 -
Seca3g08041 1738 SUPERFAMILY RING/U-box 1541 1609 - -
Seca3g08041 1738 Gene3D TAZ domain 667 755 IPR035898 -
Seca3g08041 1738 PANTHER CBP/P300-RELATED 84 480 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g08041 1738 SUPERFAMILY TAZ domain 674 754 IPR035898 -
Seca3g08041 1738 MobiDBLite consensus disorder prediction 536 580 - -
Seca3g08041 1738 ProSiteProfiles Zinc finger ZZ-type profile. 1440 1503 IPR000433 GO:0008270
Seca3g08041 1738 SMART zz_5 1439 1483 IPR000433 GO:0008270
Seca3g08041 1738 SMART zz_5 1559 1605 IPR000433 GO:0008270
Seca3g08041 1738 Pfam PHD-finger 1063 1105 IPR019787 -
Seca3g08041 1738 MobiDBLite consensus disorder prediction 881 897 - -
Seca3g08041 1738 SUPERFAMILY RING/U-box 1420 1493 - -
Seca3g08041 1738 MobiDBLite consensus disorder prediction 908 922 - -
Seca3g08041 1738 Gene3D - 1436 1496 IPR043145 -
Seca3g08041 1738 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1122 1558 IPR031162 GO:0004402
Seca3g08041 1738 Gene3D TAZ domain 1617 1734 IPR035898 -
Seca3g08041 1738 MobiDBLite consensus disorder prediction 555 580 - -
Seca3g08041 1738 Pfam Histone acetylation protein 1162 1378 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g08041 1738 Pfam TAZ zinc finger 1630 1700 IPR000197 -
Seca3g08041 1738 Pfam TAZ zinc finger 679 747 IPR000197 -
Seca3g08041 1738 CDD PHD_HAC_like 1032 1104 - -
Seca3g08041 1738 ProSiteProfiles Zinc finger TAZ-type profile. 1620 1703 IPR000197 -
Seca3g08041 1738 FunFam Histone acetyltransferase HAC1 1559 1610 - -
Seca3g08041 1738 FunFam Histone acetyltransferase HAC1-like protein 1617 1734 - -
Seca3g08041 1738 SUPERFAMILY FYVE/PHD zinc finger 1066 1106 IPR011011 -
Seca3g08041 1738 ProSitePatterns Zinc finger ZZ-type signature. 1565 1592 IPR000433 GO:0008270
Seca3g08041 1738 Pfam Zinc finger, ZZ type 1562 1603 IPR000433 GO:0008270
Seca3g08041 1738 Coils Coil 1700 1720 - -
Seca3g08041 1738 MobiDBLite consensus disorder prediction 881 942 - -
Seca3g08041 1738 Gene3D - 1559 1611 IPR043145 -
Seca3g08041 1738 FunFam Histone acetyltransferase of the CBP family 12 1436 1495 - -
Seca3g08041 1738 SUPERFAMILY TAZ domain 1622 1705 IPR035898 -
Seca3g08041 1738 SMART KAT11_2 1155 1452 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g08041 1738 MobiDBLite consensus disorder prediction 923 937 - -
Seca3g08041 1738 ProSiteProfiles Zinc finger TAZ-type profile. 670 750 IPR000197 -
Seca3g08041 1738 SMART TAZ_2 671 750 IPR000197 -
Seca3g08041 1738 SMART TAZ_2 1623 1701 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08041 Seca-Chr3 204542902 204556901 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca3g08041 HAT_KAT11 6.9e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08041 K04498 - gmx:100809207 2790.37