Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08038 ATGGGAGAAAATCAAGGAGCAGCAACAACAGCAACAACATCAACAGCAACCGCTACAGCCACAACATCATCGCGGCTGGCGATGAGAGGCGGCGGCGGAGGCGGAGAGATCGTGGAGGTGCAAGGAGGGCACATTGTTCGGTCGACGGGGAGAAAGGACCGTCACAGCAAGGTATGCACCGCGAAAGGCCCACGAGACCGCCGAGTGAGGCTTTCGGCCCACACCGCGATCCAATTCTACGACGTGCAGGACCGATTGGGCTACGACAGGCCCAGCAAGGCAGTGGACTGGCTCATAAAAAAAGCCAAAGCTGCCATCGACGAACTCGCTGAGCTTCCCGCATGGAACCCCACCGCCACGTGCTCATCTGCACCACAACAACAAGAGTCACAGCAGCAGCAGCAACATCACATGGTCCACCGGCAATCACCGGTGGACGACCCTGTAATTGCTTCAAGTAGCCGCAACGTGGCGGTGGGTGGAAGAATACCAGAACAATTCCCCTCCCTCTCGCAGCAATTGGATAACAACAATACCGATGGTAGTGGGAAATACAAATACAACAGTGGTGGTTCTGGTTTTCTTCCAACGTCATTGGACACAGACATTGCGGATACTATTAAGTCTTTCTTTCCGATGGAGACAGCTACGACGTCGTTTCAGAGCTATGCGCCACCGCCAGATTTGTTATCACGAACAGCAAGCGGTGGTAGCCAGCAAGATCTGAGACTCTCATTGCAGTCATTTCAGGACCCTATTTTACTTCACCATCACCAACAGACTCAGAACCACCATGAACAGGTACTTTTTGCCGGAACCGCCGCGCTTGGCTTTGACGGCGGTTCCTCCACTGGGTGGTCTGAACAGCAGCAGCAGCAGCAGGAGGAGGAGGAAAATGAGCATAGTAGGTTGCATAGAATGGTGGCTTGGAATGCGAATGCTGCAGATGCTAGTAACAGTGGTCATGGTGCTGGGTTTGTTTTTAGTGCACAGTCACCGGCGATGGTGCCGGCGTCGGTGTTTGGCCATGGTCATGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCATTTGGTTCGTGCTTGGATAGACCCTTCCATTGCGACGGTAGCGGATCACCACCATCATCACTACCTCTCGCCGGCGATCCATCAGGCTTCTGTCTCAGGTGCTGGATTTGCTGCCCCTGGTGGCTTCTCCGGCTTCCACATACCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1305 0.5418 MGENQGAATTATTSTATATATTSSRLAMRGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWNPTATCSSAPQQQESQQQQQHHMVHRQSPVDDPVIASSSRNVAVGGRIPEQFPSLSQQLDNNNTDGSGKYKYNSGGSGFLPTSLDTDIADTIKSFFPMETATTSFQSYAPPPDLLSRTASGGSQQDLRLSLQSFQDPILLHHHQQTQNHHEQVLFAGTAALGFDGGSSTGWSEQQQQQQEEEENEHSRLHRMVAWNANAADASNSGHGAGFVFSAQSPAMVPASVFGHGHGQYFSQRGPLQSSNTHLVRAWIDPSIATVADHHHHHYLSPAIHQASVSGAGFAAPGGFSGFHIPARIQGEEEHDGVSDKPSSASSDSRH. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08038 434 MobiDBLite consensus disorder prediction 166 187 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 163 187 - -
Seca3g08038 434 Coils Coil 287 307 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 1 66 - -
Seca3g08038 434 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 357 IPR005333 GO:0003700
Seca3g08038 434 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 117 139 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 280 301 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 413 434 - -
Seca3g08038 434 Pfam TCP family transcription factor 50 155 IPR017887 -
Seca3g08038 434 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Seca3g08038 434 MobiDBLite consensus disorder prediction 46 66 - -
Seca3g08038 434 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08038 Seca-Chr3 204477124 204480140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08038 32 434 TCP Transcription Factor Family AT3G15030 47.235 7.71e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g08038 TCP 6.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08038 - - mtr:25502512 457.218