Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08023 ATGAGACAACTGGTGTGTAACAGAGAGGGTGAAAGGAAGAAGAAACATTTGATGCGTGTGGACAGCGTTAGGCAGCCCAGGTCTCTGACTCGAACTCGGTGTCCTGCAAGGCTAAGAGTACATTATAGTTTCAAGACTAGCAAGTGGAGGGTTACTGTATTTGAGGAAAAGCACAATCATGAGTTAACTCCTCTTAAATTTGTTCATTTGATACTTGCTTATAGAGGTTTGACTGAAGCTGATAAAGTTCAGGTTAATAACTTACACACACATGGTGTAAGGACTTGCCATATTTTGGGTTTGTTGTTAGGCCAGAAGGGTGGTCATTCAGAGTTGGGTTTCTGTAAGAAGGATCTATATAACCACATTGATAAGGAGAAGAGGACGGTTATAGAAGATGGGGATGCTTTTGTTGCATTATGTTATTTGCAGGCTAAGATTGTTAACGATCCAATGTCTTACACATTATTTACCATTACAGATGATGGATGTTTACAGAACTTGTTTTGGGCTAATGGTGCAAGTCGTGTAGATTATGAATGTTTTGGTGATGTACTGGCTTTTGACACTACTTACAAAAAGAATAAGTATAATAAGCCTCTTGTTATTTACTGTGGTTATAACCACCATGGTGAGACAACAATTTTTGCTTGTGCTTTAGTTGCTGATGAAAAAACAGAGACTTATAAGTGGGTTTTAGAAACTTTTTTGGATGCCATGTTTGGCAAAGAACCAACAGTTGTTGTCACTGATGGAGATGGAGCAATGAGGGAAGCCATTAAGGTTGTGTTTCCTAATGCTCATCATAGGCTTTGCTCTTGGCATTTGCATCAAAACGCATGTGAGAATGTAAAGATTCTGAAATTCTTGGAAGACTTTAAATCCTTGATTTATGCCAATTTCACTCCTGAGCAGTTTGAAAATGAGTGGAAAAGTATAATTGAGAAATATGGTGTTTCTAATAACAAATGGGTGAAAAAGGTATATGAGATGAAGAGTATGTGGGCAAGTGCTTTCATGAGAGAAGATTTTTGTGGTATAAGAACAACCTCTATGTGCGAGGGAATCAATTCTTTTATTAAGAAGTATGTCCATAACAAGAATTCCCTGGTTGATTTTATCCATAACTTTGAGAGGGCAGTCAAAGAATACAGACATAATGAATTAATGAGTGATTTTAGGTCTATGTATTTTGTCCCTGTTTTGACAACTGCATTGACAGTTTATGAGGATACTGCCTCAAAGTTATTTACCAGGAATAAATTTAGAGATGTAAAAAATCAGATTGAAGGAGCAGCTGCCTTAAATGTGATTCAACGATATGAGGTTGGAAACAATGTGATGATAAAAATGAATAAATTTTGCAATCCGAAGATGGAGTATGAAGTTTCAATTATTAAGGATGAAGGGAGATATATATGTGATTGTCGAATGTTTGAACGCATAGGTATTCCTTGCAACCATATTTTCTGTTCCATGAAGAATGAGCATGTGAATGAGTTTCCAGCATCATTGGTTTGCAAGAGATGCACAAAGTCAACAAAGATTGACTTTGTCCAAAGGATTAATTCAGAAGAACAAGGGTCTGAAAAGAGGACTTTGTTGCAATTAGGTGCATTGGTTGGTGCATGTAATAGGCTTTTTGAAGTTTGTTCCCAAAGACTTTCTGAATTTTCAGAGAATTACCAATAG 1692 0.367 MRQLVCNREGERKKKHLMRVDSVRQPRSLTRTRCPARLRVHYSFKTSKWRVTVFEEKHNHELTPLKFVHLILAYRGLTEADKVQVNNLHTHGVRTCHILGLLLGQKGGHSELGFCKKDLYNHIDKEKRTVIEDGDAFVALCYLQAKIVNDPMSYTLFTITDDGCLQNLFWANGASRVDYECFGDVLAFDTTYKKNKYNKPLVIYCGYNHHGETTIFACALVADEKTETYKWVLETFLDAMFGKEPTVVVTDGDGAMREAIKVVFPNAHHRLCSWHLHQNACENVKILKFLEDFKSLIYANFTPEQFENEWKSIIEKYGVSNNKWVKKVYEMKSMWASAFMREDFCGIRTTSMCEGINSFIKKYVHNKNSLVDFIHNFERAVKEYRHNELMSDFRSMYFVPVLTTALTVYEDTASKLFTRNKFRDVKNQIEGAAALNVIQRYEVGNNVMIKMNKFCNPKMEYEVSIIKDEGRYICDCRMFERIGIPCNHIFCSMKNEHVNEFPASLVCKRCTKSTKIDFVQRINSEEQGSEKRTLLQLGALVGACNRLFEVCSQRLSEFSENYQ. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08023 563 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Seca3g08023 563 Pfam MULE transposase domain 185 279 IPR018289 -
Seca3g08023 563 SMART 26again6 472 499 IPR006564 GO:0008270
Seca3g08023 563 ProSiteProfiles Zinc finger SWIM-type profile. 461 497 IPR007527 GO:0008270
Seca3g08023 563 PANTHER OS01G0519700 PROTEIN 2 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08023 Seca-Chr3 203812680 203814371 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g08023 MULE 6e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08023 - - tpra:123910662 736.873