LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g08017	ATGGCCATGGATCCCACAAAGAAGCGCAAGATTGACGAGAACGGCTATGGCGGCGGCGGAGGCGATTCTGATCACCTAAAGCTCTCCCCGGCGGACGCCCGTAAGATCATCGAGCGGTTCACCCCCGACCAGCTCCTTGACATCCTCCAGGACGCCGTCGTTCGCCACGCCGACGTGCTCGCAGCCGTCCGCGCCGTCGCCGACCCTGACGTCTCCCAGCGCAAGCTCTTCATCCGTGGCCTCGGTTGGGACACCACCACCGACGGCCTTCGGTCCCTCTTTTCCACCTACGGGGACCTCGAAGAGGCCGTCGTGATCCTCGACAAGGCCACCGGAAAGTCTAAGGGCTATGGATTCGTCACCTTCCGCCACGTCGATGGTGCCCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGGCGCGTCACCGTCACACAACTCGCCGCTGCCGGCAATTCTGGCTCTAATACCAATGCAGCCGACATAGCGCTTCGCAAGATTTACGTTGCTAACGTTCCTCCGGATCTCCCAGCAGACAAGCTCCTCGCCCACTTCTCTCTCTACGGTGAGATCGAAGAAGGTCCATTAGGCTTCGACAAACAGACAGGAAAGTCTAAGGGCTTCGCGCTCTTCGTGTATAAGACCCCCGAGGGGGCTCAAGCGGCACTCTCGGATCCCGTAAAGACTGTGGAGGGAAGACAGCTGAATTGCAAGCTGGCGATAACTGACAATAAGCAAGGTAAGCGTGGTGGGCCCGGTCCGGTTGGACCGGATGGGGTTCAGGGCCACGGGAATGCTCATGGACATCATGGTGATGGGATGGGGATGCCTCCGGCAGCGGGTTCTGGGCCCGGGTCACTTTCGGGTCAGTATGGCGGCCCGGTTGGTTTGGGTTCTTATGGTGGATTTGGTGGTGGGCTTCAGGGTCAGCCTCCGCTAGGTAATCATCCCATGAATTCATCGGTTGGTGGGTTGTCTTCGGTGGGGAATCAGGGGCCATCAGCGATGGGCGGTGCTGGCGGGTACGGTGCTGGGCTGGGTGGTCATTATGGGGGATATGGTGGGCCTGGGTCGACGGGATTTGGTGGATTGGGCGGTGCTGGTGCTGGTGCAGGTGGTGCGGGCGCGGGTGCCGCTGGTGGACTTGGTGGTTCCGGTGGCGCAGGTTCCTTGTACAGATTGCCGAGTTCAGGTGGAATGCAAGCTGGTGGGTATCCAGACAGTGGGCACTATAGTTTATCAGCTTCATCTGGGTACCAGAATCAACATCATCCTCCTGCTGGGGCGTCACCTGTACCTAGGGTTCCCCCGGGTTCAATGTATCCAAATGTGCCCCCTTACTACTGA	1350	0.6	MAMDPTKKRKIDENGYGGGGGDSDHLKLSPADARKIIERFTPDQLLDILQDAVVRHADVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVANVPPDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALSDPVKTVEGRQLNCKLAITDNKQGKRGGPGPVGPDGVQGHGNAHGHHGDGMGMPPAAGSGPGSLSGQYGGPVGLGSYGGFGGGLQGQPPLGNHPMNSSVGGLSSVGNQGPSAMGGAGGYGAGLGGHYGGYGGPGSTGFGGLGGAGAGAGGAGAGAAGGLGGSGGAGSLYRLPSSGGMQAGGYPDSGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY.	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g08017	449	PANTHER	GEO13361P1-RELATED	57	337	-	-
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	1	15	-	-
	Seca3g08017	449	Gene3D	-	55	157	IPR012677	-
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	411	425	-	-
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	242	330	-	-
	Seca3g08017	449	FunFam	UBP1-associated protein 2C isoform A	57	160	-	-
	Seca3g08017	449	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	74	151	IPR000504	GO:0003723
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	1	26	-	-
	Seca3g08017	449	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	168	235	IPR000504	GO:0003723
	Seca3g08017	449	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	76	143	IPR000504	GO:0003723
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	404	449	-	-
	Seca3g08017	449	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	166	247	IPR000504	GO:0003723
	Seca3g08017	449	SUPERFAMILY	RNA-binding domain, RBD	159	272	IPR035979	GO:0003676
	Seca3g08017	449	SMART	rrm1_1	167	239	IPR000504	GO:0003723
	Seca3g08017	449	SMART	rrm1_1	75	147	IPR000504	GO:0003723
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	430	449	-	-
	Seca3g08017	449	SUPERFAMILY	RNA-binding domain, RBD	67	151	IPR035979	GO:0003676
	Seca3g08017	449	Gene3D	-	158	277	IPR012677	-
	Seca3g08017	449	MobiDBLite	consensus disorder prediction	314	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g08017	Seca-Chr3	203578836	203584384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g08017	162	241	C2H2 Transcription Factor Family	AT2G19380	41.250	6.24e-11	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g08017	K12741		-	gmx:100776220	519.235