Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08015 ATGGTCTCTTACTCAAGCTGGAATGGAGAAAAGATGCATGCTAATCATGATCTAATCACTGGCTTTCTCAAGAACACACTTTGTTTCAGGGAGGGTCACAGGGTTACTCTAAATGTTTATGACCTAAGCCAAGGGCTTGCTCGACAGCTCTCAATGTCTTTTTTGGGGAAGGCTATTGAAGGCATTTGGCACACAGGAATTGTGGTTTATGGTAACGAGTATTTCTTTGGTGGGGGCATGCAACATTCTCCTGCTGGATTAACACCATATGAACCAGAAGTACTAGTTGGTGGGAGTGACTTCTATGCATTCCCACGTCTAGATCCTAAAAGTGAAAGAATAGCATGGATACAATGGAGTCACCCCAACATGCCCTGGGATAAATCAGAACTTTGGATGGTAGCAGGAAGATTTGTAAATGCTTATTCTAGGAAGATTTGA 441 0.4263 MVSYSSWNGEKMHANHDLITGFLKNTLCFREGHRVTLNVYDLSQGLARQLSMSFLGKAIEGIWHTGIVVYGNEYFFGGGMQHSPAGLTPYEPEVLVGGSDFYAFPRLDPKSERIAWIQWSHPNMPWDKSELWMVAGRFVNAYSRKI. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08015 146 PANTHER DESUMOYLATING ISOPEPTIDASE 32 91 IPR008580 GO:0008233
Seca3g08015 146 Pfam PPPDE putative peptidase domain 33 93 IPR008580 GO:0008233
Seca3g08015 146 ProSiteProfiles PPPDE domain profile. 33 146 IPR008580 GO:0008233
Seca3g08015 146 Gene3D PPPDE domains 29 115 IPR042266 -
Seca3g08015 146 SMART DUF862_2a 33 129 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08015 Seca-Chr3 203553797 203555503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08015 85 133 Carbohydrate Esterase AT5G36210 75.510 2.71e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08015 K22762 - gmx:100787486 123.635