Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08012 ATGCAAAAACGAATTAATTACATTTTTGTAATTTTGTCTTTGTTTCAGTGCCTTGATGGACATATTACTTGTGGCACTTGTTGTCGCAAATTTAGGAATAAGTGCACCATATGCTCTTTACCCATCCATAGTCGGTGTCGTGCTATAGAGAAACTATTAGAATCTATCAAAATAGCATGTGACAATCAAGAATATGGGTGTAACTCAATAGTGAGGTATAGTGAGAAATATGCACATGAGAAGACATGTGTCTTTCAACCTTGCTTATGTCCCCAGGAAGGTTGCAACTTTTTTTCCAATTCCAGGGAATTGATCATCCATTTTAGGAAAAACCATCTTCTTGAGGAACCACCATTTAAATATGGAGAAGTTTTTATTACCTCATTACACCTTAACAAGAAAATTGTTGTTCTTCAAGCACAGACTGATGAAGAACTTTTTGTTATCAATAACAAGGTCGATCCTTTAGGGAATGTTCTCATCCTTTGTCACATTGGGCCCAATACAATGAACCCAGAGTTTGATCTTGAAATGTCGATCAGGTCTCAACAAGGATGCAACTCTTTATATATACATTCAAATGTGGAGAACATTCAATTTGGCAAACCTGCTTCATCATCAATGTTCCTTCTGGTTCCATTCGATTTTTCACAACCTTCTGGAGAGCTCATGTTGAAAATTCGCATAAGTATGATTGGTGTTGCGCAGCCTGAAGGCAACCCATAG 726 0.3719 MQKRINYIFVILSLFQCLDGHITCGTCCRKFRNKCTICSLPIHSRCRAIEKLLESIKIACDNQEYGCNSIVRYSEKYAHEKTCVFQPCLCPQEGCNFFSNSRELIIHFRKNHLLEEPPFKYGEVFITSLHLNKKIVVLQAQTDEELFVINNKVDPLGNVLILCHIGPNTMNPEFDLEMSIRSQQGCNSLYIHSNVENIQFGKPASSSMFLLVPFDFSQPSGELMLKIRISMIGVAQPEGNP. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08012 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 108 IPR013083 -
Seca3g08012 241 SUPERFAMILY TRAF domain-like 55 231 - -
Seca3g08012 241 ProSiteProfiles Zinc finger SIAH-type profile. 55 113 IPR013010 GO:0008270
Seca3g08012 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 13 231 IPR044286 -
Seca3g08012 241 Pfam Seven in absentia protein family 45 181 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08012 Seca-Chr3 203458024 203458749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08012 14 115 C3H Transcription Factor Family AT2G41980 32.381 2.43e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08012 K04506 - qsu:112007121 187.963