Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08008 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGCCTTCCTCAACCACACGATTGAACGGAGTTGATATGGATATTTCAGAAATTCAGAATGTCAACATTTACGCTTACAAGGAGTTGCAAATTGCCACAGAAAATTTTAGTCCCGCAAGAAAGATAGGGCAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTGAAAGATGGTTCTCTGGTAGCTATAAAAGTTCTATCAGCTGAATCAAGGCAAGGGGTCCGGGAATTCTTGACAGAAATCAAGGTGATCACTAGTATAGAACATGAGAATCTAGTTAAGTTGTTTGGATGCTGTGTGGATGGCAACCACAGGATTCTGGTATATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTTCTCGGTTCAGGCCATAGTAGCATCCAATTCAGTTGGCATGTAAGGCGGAACATTTGCATAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACATATTATTCATAGAGACATAAAAGCCAGCAATGTACTACTTGACAAAGACCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTTCTCCAAACTTGACCCATATTAGTACAAGGGTTGCTGGAACAGTTGGTTATCTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCAGACATCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTTACAAGGGCATGGAATTTGTATGAGAGAGGGGAGCTAGAAATATTGGTGGATGCTTTTCTAGATGGAGACTTCAATATTGAGGAAGCAATCAGGTTTTGTAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTGACATGCTTGTAGGTGAAAAAGATGTGAATGAGGAGAATATTGTAAAACCAGGCGTGATATTTGAATTTGTGGAAGCCACAGTGGAAGGGAAACAAAAAAGCAAGTCTGAAGTGGAAAGTACATCTTTGTTGGCTGGTTCAAGGAAGCAAGATGATTCATCTTCATCAGGAACTGTGACCTCTTTTGCTACCATGACCTTCACTGCAATATATGATCGAAGCAATTAA 1173 0.4109 MTCCSHLFRKKGPSSTTRLNGVDMDISEIQNVNIYAYKELQIATENFSPARKIGQGGFGSVYKGKLKDGSLVAIKVLSAESRQGVREFLTEIKVITSIEHENLVKLFGCCVDGNHRILVYGYLENNSLAQTLLGSGHSSIQFSWHVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLISPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWNLYERGELEILVDAFLDGDFNIEEAIRFCKIGLLCTQDSPQLRPSMSTVLDMLVGEKDVNEENIVKPGVIFEFVEATVEGKQKSKSEVESTSLLAGSRKQDDSSSSGTVTSFATMTFTAIYDRSN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08008 390 FunFam cold-responsive protein kinase 1 123 334 - -
Seca3g08008 390 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08008 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca3g08008 390 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Seca3g08008 390 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Seca3g08008 390 MobiDBLite consensus disorder prediction 354 373 - -
Seca3g08008 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 362 - -
Seca3g08008 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Seca3g08008 390 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08008 390 CDD STKc_IRAK 53 318 - -
Seca3g08008 390 PIRSF ILK 334 379 - -
Seca3g08008 390 PIRSF ILK 5 273 - -
Seca3g08008 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca3g08008 390 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08008 390 FunFam cold-responsive protein kinase 1 18 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08008 Seca-Chr3 203345921 203349984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08008 35 326 Receptor kinase-like Gene Family AT1G07650 56.314 2.06e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08008 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08008 - - gmx:100801735 665.996