Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08004 ATGTCACATTCCGGGAAACCCGTTTCCGAGTTAGGGCTCAGCGAGCGCTTCCGCGACTCACTGAGTTGCTGCGAAGACAAAAACAAGCCCGATTTCCGAGAACTCGATCTGGGCTCTCCCATTTCGCCGTTACGAACTCAACACCATCAGAGTGCAGCCACCACCAGCAGTAGTAGCAGCAGCGGGTCTTCCGGGTCGGTTTCGGGTCGAAATGGGAACGACCCGGTTACGAGGAGATCCGATTCCGGTGAACTCTCCGACAACAACAGTCCGACCCAGAGCCTCAAACCGGTTCACAGGAGATCCGTTTCGAGTACCTCGTTGCCTTTAATCTATTCGGGCCAAACACAGAAATCCCCCTCGTCGACCTCCTCCTCCGCCGCCGTGAATTCTCCGCCGATTAACGTTCTTCCCGCCGGAAACATATGCCCCTCCGGCAGGGTTCTTAAGACTGGCATGGTGCCGAACCGGAGCTCCAGGACCGACGTTTTGGGCTCTGGCACGGTGAATTACGGCCATGGAAGCATAATGCGGGGCGGAAAAGGTGGCGGTGGCAACACTAGCGAGGCGGCGAGATTGAGCAGCGGTGGCGGTGGGGGTGGGGATTCCACTAAGAGGGTGGATCCGGAAGAGGTGAAGAGAGCAGGGAATGAAGAGTACAAAAGGGGGCACTTTGCTGAGGCTTTGTGCCTGTATGATCGGGCAATTGCATTGTCTCCGGGCAACGCCGCTTACCGGAGTAACCGGTCCGCCGCATTGACCGGTTTGGGACAGTTGACGGAGGCTGTGACTGCTTGTGAGGAAGCTGTGCGGTTGGATCCTAATTATGGAAGGGCACATCAGCGTTTGGCTGCTCTTTTTCTCAGGTTAGGACAAATTGAGAATGCTAGGAAGCATCTCTGTTATCCTGGGCTGCTGCCAGATCCTTCCCAGTTGCAGAAGTTGCAAATGGTGGAAAAGCACATGAGCAAATGTGTGGATTTAAGGAGAATAAGAGATTGGAAAAGTGTTCTGAAGGAAGTTGATGCTGCTATTGCTGCTGGAGTGGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCACTTCTGAAGCTTCTCCAAATTGATGATGCTGAATCGAGTTTACTACGGATTCCCAAATGTGAACCGCATCCTACTTCCTCATCACAGGCAAGGTTTTTTGGAATGCTTTCTGAAGCTTATTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGATCCCCGGAACGTTGAAGTTGCTGTTTTGCTCAGCAATGTAAGGATGGTGGCAAGAGCTCGATTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCATGCTCAGCGTATGGGGAAGGTTTGAGGCTGGATCCTTCAAATTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTCGGGCAATGGGAAAGATCAATTGAAGACTCCAATCAAGCCTTACAAATCCGACCAAATTACACAAAAGCCATTCTTCGAAGGGCAGCCTCAAGTAGCAAGCTAGAAAGGTGGGTAGAAGCAGTTAAGGATTATGAGCTCTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCTGAAGCTCTATTTCATGCACAAGTTTCATTAAAGAAATCTCGTGGGGAAGAAGTACAAAATTTAAAATTTGGAGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTCAGAGCTGCAATATCTGTGCCAGGTGTTTCTGTTGTCCATTTTCAAACCGCATCTAACCTACAATGCAAGCAAATATCACCATTTGTGGATACACTATGCGGTCGCTATCCATCTATTAACTTCCTTAAGGTGGATATTCAAGAAAGCCCATCAGTTTCTACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAACGGCAGCCGAGTGAAGGAAATTGTATGCCCTACTCGTGATGTGTTGGAACACTCCGTTAGGCATTACAGCTTGTAA 2046 0.4888 MSHSGKPVSELGLSERFRDSLSCCEDKNKPDFRELDLGSPISPLRTQHHQSAATTSSSSSSGSSGSVSGRNGNDPVTRRSDSGELSDNNSPTQSLKPVHRRSVSSTSLPLIYSGQTQKSPSSTSSSAAVNSPPINVLPAGNICPSGRVLKTGMVPNRSSRTDVLGSGTVNYGHGSIMRGGKGGGGNTSEAARLSSGGGGGGDSTKRVDPEEVKRAGNEEYKRGHFAEALCLYDRAIALSPGNAAYRSNRSAALTGLGQLTEAVTACEEAVRLDPNYGRAHQRLAALFLRLGQIENARKHLCYPGLLPDPSQLQKLQMVEKHMSKCVDLRRIRDWKSVLKEVDAAIAAGVDSCVQLFMCRAEALLKLLQIDDAESSLLRIPKCEPHPTSSSQARFFGMLSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLSNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALQIRPNYTKAILRRAASSSKLERWVEAVKDYELLRRELPDDNEVAEALFHAQVSLKKSRGEEVQNLKFGGEVEDISGLEQFRAAISVPGVSVVHFQTASNLQCKQISPFVDTLCGRYPSINFLKVDIQESPSVSTAENVRIVPTFKIYKNGSRVKEIVCPTRDVLEHSVRHYSL. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08004 681 SUPERFAMILY TPR-like 209 437 IPR011990 GO:0005515
Seca3g08004 681 Pfam Tetratricopeptide repeat 215 275 - -
Seca3g08004 681 Gene3D Tetratricopeptide repeat domain 207 567 IPR011990 GO:0005515
Seca3g08004 681 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Seca3g08004 681 SUPERFAMILY Thioredoxin-like 484 679 IPR036249 -
Seca3g08004 681 Gene3D Glutaredoxin 573 680 - -
Seca3g08004 681 Pfam Tetratricopeptide repeat 403 434 IPR019734 GO:0005515
Seca3g08004 681 MobiDBLite consensus disorder prediction 19 34 - -
Seca3g08004 681 MobiDBLite consensus disorder prediction 43 132 - -
Seca3g08004 681 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 678 IPR044534 -
Seca3g08004 681 MobiDBLite consensus disorder prediction 152 168 - -
Seca3g08004 681 SMART tpr_5 401 434 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 353 386 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 209 242 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 243 276 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 481 514 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 515 548 IPR019734 GO:0005515
Seca3g08004 681 SMART tpr_5 447 480 IPR019734 GO:0005515
Seca3g08004 681 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Seca3g08004 681 CDD TRX_family 586 667 - -
Seca3g08004 681 Pfam Thioredoxin 587 672 IPR013766 -
Seca3g08004 681 MobiDBLite consensus disorder prediction 1 215 - -
Seca3g08004 681 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Seca3g08004 681 FunFam TPR repeat-containing thioredoxin TTL4 573 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08004 Seca-Chr3 203054666 203057860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08004 446 591 U-box Gene Family AT3G07370 28.962 6.19e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08004 - - gmx:100805790 1008.05